<DIV id=RTEContent> <DIV>Hai,</DIV> <DIV> </DIV> <DIV>I am using force field # 4 ( ffgmx* ). </DIV> <DIV> </DIV> <DIV>Thank you..........</DIV> <DIV> </DIV> <DIV>Poornima</DIV> <DIV><BR> <BR><B><I>David van der Spoel <spoel@xray.bmc.uu.se></I></B> wrote:</DIV> <BLOCKQUOTE class=replbq style="BORDER-LEFT: #1010ff 2px solid; MARGIN-LEFT: 5px; PADDING-LEFT: 5px">poor nima wrote:<BR>> Hai,<BR>> <BR>> I am using version 3.2.1. I am getting the following error when I run <BR>> pdb2gmx:<BR>> <BR>> *Residue 50Fatal error: *Atom type IW (residue HO4) not found in <BR>> atomtype database<BR>> <BR>> I have tried 4 different proteins. With all it gives the same error.<BR>what force field?<BR>> <BR>> can anybody help to solve this!<BR>> <BR>> Happy New Year to all.<BR>> <BR>> Thanks in advance.<BR>> <BR>> With prayers,<BR>> Poornima.<BR>> <BR>> <BR>> <BR>> Send instant messages to your online
friends http://in.messenger.yahoo.com<BR>> <BR>> <BR>> ------------------------------------------------------------------------<BR>> <BR>> _______________________________________________<BR>> gmx-users mailing list<BR>> gmx-users@gromacs.org<BR>> http://www.gromacs.org/mailman/listinfo/gmx-users<BR>> Please don't post (un)subscribe requests to the list. Use the <BR>> www interface or send it to gmx-users-request@gromacs.org.<BR><BR><BR>-- <BR>David.<BR>________________________________________________________________________<BR>David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,<BR>Dept. of Cell and Molecular Biology, Uppsala University.<BR>Husargatan 3, Box 596, 75124 Uppsala, Sweden<BR>phone: 46 18 471 4205 fax: 46 18 511 755<BR>spoel@xray.bmc.uu.se spoel@gromacs.org http://xray.bmc.uu.se/~spoel<BR>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++<BR>_______________________________________________<BR>gmx-users
mailing list<BR>gmx-users@gromacs.org<BR>http://www.gromacs.org/mailman/listinfo/gmx-users<BR>Please don't post (un)subscribe requests to the list. Use the <BR>www interface or send it to gmx-users-request@gromacs.org.<BR></BLOCKQUOTE><BR> <DIV></DIV></DIV><p>Send instant messages to your online friends http://in.messenger.yahoo.com