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<DIV><FONT face=Arial size=2>Hi all<BR>I'm trying to calculate the rmsd for
C-alpha in my system (for 2ns long MD).<BR>When I:<BR> <BR>g_rms_gmx33 -s
po -n grupy.ndx -f po -o rmsd_mu<BR> <BR> <BR>I get the following
error:<BR> <BR>...<BR>....<BR>.......</FONT></DIV>
<DIV> </DIV>
<DIV><FONT face=Arial size=2>Group 10 ( Prot-Masses) has
4009 elements<BR>Group 11 ( Non-Protein) has 31709
elements<BR>Group 12
( DPPC) has 5200
elements<BR>Group 13
( SOL) has 26478
elements<BR>Group 14
( Cl)
has 7 elements<BR>Group 15
( Other) has 31709
elements<BR>Group 16 ( MU_FIX)
has 695 elements<BR>Select a group: 16<BR>Selected 16:
'MU_FIX'<BR>Reading frame 390 time
780.000
-------------------------------------------------------<BR>Program g_rms_gmx3,
VERSION 3.3<BR>Source code file: xtcio.c, line: 83<BR> <BR>Fatal
error:<BR>Magic Number Error in XTC file (read 0, should be
1995)<BR>-------------------------------------------------------<BR> <BR>"Step
Aside, Butch" (Pulp Fiction<BR> <BR> <BR> <BR>Please give me some
suggestions what might be the problem, and how to fix it?<BR>(I’m using
GROMACS_3.3)<BR></FONT></DIV><p><table cellpadding=8><tr><td style="background: white; color:#909090; font-family: sans-serif;"><span style="font-size: 10pt; font-weight: bold; color=#404040">Ten list został przeskanowany przez program <a href="http://www.mks.com.pl"><span style="color: red; font-size:10pt;">ArcaMail</span></a></span><br><span style="font-size: 8pt; font-weight: normal;">Silnik (2005-06-03/2005-12-23)</span></td><td style="background: white; color:#909090; font-family: sans-serif;"><span style="font-size: 10pt; font-weight: bold; color=#404040">This message has been scanned by <a href="http://www.mks.com.pl"><span style="color: red; font-size:10pt;">ArcaMail</span></a></span><br><span style="font-size: 8pt; font-weight: normal;">Engine (2005-06-03/2005-12-23)</span></td></tr></table></p></BODY></HTML>