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<DIV><FONT face=Arial size=2>Hi </FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>This time I don't have a quick answer. Problems
during compilation, should be described more carefully since the problem could
come from almost anywhere.</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>Again, I forwarded your post to the mailing list,
where for sure, there's a couple of guys with more experience than me, to make
you through the problem.</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>Best regards,</FONT></DIV>
<DIV><FONT face=Arial size=2>Nuno</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<BLOCKQUOTE
style="PADDING-RIGHT: 0px; PADDING-LEFT: 5px; MARGIN-LEFT: 5px; BORDER-LEFT: #000000 2px solid; MARGIN-RIGHT: 0px">
<DIV style="FONT: 10pt arial">----- Original Message ----- </DIV>
<DIV
style="BACKGROUND: #e4e4e4; FONT: 10pt arial; font-color: black"><B>From:</B>
<A title=natarajmtech@gmail.com href="mailto:natarajmtech@gmail.com">Nataraj
Balakrishnan</A> </DIV>
<DIV style="FONT: 10pt arial"><B>To:</B> <A title=nunolf@ci.uc.pt
href="mailto:nunolf@ci.uc.pt">Nuno R. L. Ferreira</A> </DIV>
<DIV style="FONT: 10pt arial"><B>Sent:</B> Friday, January 13, 2006 10:57
AM</DIV>
<DIV style="FONT: 10pt arial"><B>Subject:</B> Re: Req for GROMACS config in
cygwin</DIV>
<DIV><BR></DIV>
<DIV>Dear sir,</DIV>
<DIV> Thank you very much for your timely
help, It realy worked now...I could end up my frustration of three long days
by your mail. But now I am having another problem in running make command. It
goes on fine until I found these errors ...if you could simillarly give me
some quick solution for this that will save my lot of efforts to put in to fix
the problem by myself. </DIV>
<DIV> </DIV>
<DIV>the error is as found in terminal is</DIV>
<DIV> </DIV>
<DIV> mknb_outerloop.o mknb_innerloop.o mknb_interactions.o, ...)
failed.<BR>make (e=87): The parameter is
incorrect.<BR>C:\Cygwin\bin\make.exe[5]: *** [mknb] Error
87<BR>C:\Cygwin\bin\make.exe[5]: Leaving directory `c:/gromacs-
3.3/src/gmxlib/nonbonde<BR>d/nb_kernel'<BR>C:\Cygwin\bin\make.exe[4]: ***
[all-recursive] Error 1<BR>C:\Cygwin\bin\make.exe[4]: Leaving directory
`c:/gromacs-3.3/src/gmxlib/nonbonde<BR>d'<BR>C:\Cygwin\bin\make.exe[3]: ***
[all-recursive] Error 1 <BR>C:\Cygwin\bin\make.exe[3]: Leaving directory
`c:/gromacs-3.3/src/gmxlib'<BR>make.exe[2]: *** [all-recursive] Error
1<BR>make.exe[2]: Leaving directory
`c:/gromacs-3.3/src'<BR>C:\Cygwin\bin\make.exe[1]: *** [all] Error 2
<BR>C:\Cygwin\bin\make.exe[1]: Leaving directory
`c:/gromacs-3.3/src'<BR>C:\Cygwin\bin\make.exe: *** [all-recursive] Error
1<BR> </DIV>
<DIV> </DIV>
<DIV>Sorry for troubling you again and again.</DIV>
<DIV> </DIV>
<DIV>With regards,</DIV>
<DIV>B.Nataraj<BR><BR> </DIV>
<DIV><SPAN class=gmail_quote>On 1/13/06, <B class=gmail_sendername>Nuno R. L.
Ferreira</B> <<A href="mailto:nunolf@ci.uc.pt">nunolf@ci.uc.pt</A>>
wrote:</SPAN>
<BLOCKQUOTE class=gmail_quote
style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid">
<DIV><FONT face=Arial size=2>Hi Nataraj</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>Cygwin running gmx was long time
ago!</FONT></DIV>
<DIV><FONT face=Arial size=2>I no longer have that combination running. But,
the problem seems to be on gmx not finding the fftw libraries.</FONT></DIV>
<DIV><FONT face=Arial size=2>When executing the configure script add the
flags CPPFLAGS & LDFLAGS.</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>If the fftw was installed say at /opt/fftw,
then try:</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>CPPFLAGS=-I/opt/fftw/include
LDFLAGS=-L/opt/fftw/lib ./configure</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>I took the freedom to forward this message
to the gmx-mailing list.</FONT></DIV>
<DIV><FONT face=Arial size=2>Hope it helps.</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>Best regards,</FONT></DIV>
<DIV><FONT face=Arial size=2>Nuno</FONT></DIV>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<DIV><FONT face=Arial size=2>P.S. BTW, try a linux distro. You won't be
disappointed.</FONT></DIV>
<DIV><SPAN class=e id=q_108c322f5b369e65_1>
<DIV><FONT face=Arial size=2></FONT> </DIV>
<BLOCKQUOTE dir=ltr
style="PADDING-RIGHT: 0px; PADDING-LEFT: 5px; MARGIN-LEFT: 5px; BORDER-LEFT: #000000 2px solid; MARGIN-RIGHT: 0px">
<DIV style="FONT: 10pt arial">----- Original Message ----- </DIV>
<DIV style="BACKGROUND: #e4e4e4; FONT: 10pt arial"><B>From:</B> <A
title=natarajmtech@gmail.com
onclick="return top.js.OpenExtLink(window,event,this)"
href="mailto:natarajmtech@gmail.com" target=_blank>Nataraj Balakrishnan
</A></DIV>
<DIV style="FONT: 10pt arial"><B>To:</B> <A title=nunolf@ci.uc.pt
onclick="return top.js.OpenExtLink(window,event,this)"
href="mailto:nunolf@ci.uc.pt" target=_blank>nunolf@ci.uc.pt</A> </DIV>
<DIV style="FONT: 10pt arial"><B>Sent:</B> Friday, January 13, 2006 5:30
AM</DIV>
<DIV style="FONT: 10pt arial"><B>Subject:</B> Req for GROMACS config in
cygwin</DIV>
<DIV><BR> </DIV>
<DIV>Dear Sir,</DIV>
<DIV> I have seen your
replies regarding usage of GROMACS in Cygwin in gmxuser forum. I am having
a serious error while I run my configure program of gromacs. It ends up
with the error of following last lines of the terminal. </DIV>
<DIV> </DIV>
<DIV>checking for fseeko... yes<BR>checking for sqrt in -lm...
yes<BR>checking for fftw3.h... yes<BR>checking for main in -lfftw3f...
no<BR>configure: error: Cannot find fftw3f library</DIV>
<DIV> </DIV>
<DIV>I stricly followed the steps of configuration and installation of
fftw as per the guidliness GROMACS webpage. the FFTW installed without any
</DIV>
<DIV>error generated. Infact I installed FFTW both as double
precision and float option as per the guidliness in GROMACS webpage.</DIV>
<DIV> </DIV>
<DIV>But it really a problem when comes to the GROMACS
configuration.</DIV>
<DIV> </DIV>
<DIV>Kindly help to fix the problem.</DIV>
<DIV> </DIV>
<DIV>with regards,</DIV>
<DIV>B.Nataraj</DIV></BLOCKQUOTE><BR><BR></SPAN></DIV>
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