I would be extremely pleased if anybody would tell me how could I foce that stupid pdb2gmx program to follow the path to the directory containing .itp files (~/share/top).<br> Although in the manual it was recomended to avoid modifying .rtp files, that is the only way I found to produce a topology "semi-automatically." Is there any other reasonable way to produce a topology? Is anywhere more intelegent converter of pdb files? Is anywhere a program that permits creating a stable bond between 2 atoms in a topolgy without blowing up the last one? <br> <p>
<hr size=1>Relax. Yahoo! Mail
<a href="http://us.rd.yahoo.com/mail_us/taglines/virusall/*http://communications.yahoo.com/features.php?page=221">virus scanning</a> helps detect nasty viruses!