<div>Dear All!</div>
<div>Thanks for your replies.My CPP path seems to be ok as far as the location is concerened and I continue to get the same error messsages.</div>
<div>Is there any other reason for that ( my top files also seem to be wroking for other simulations )</div>
<div>Need help ASAP.</div>
<div>Thanks again to you all.</div>
<div>Kris</div>
<div><br><br> </div>
<div><span class="gmail_quote">On 4/4/06, <b class="gmail_sendername">Sukit Leekumjorn</b> <<a href="mailto:leekumjo@vt.edu">leekumjo@vt.edu</a>> wrote:</span>
<blockquote class="gmail_quote" style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid">I had a similar problem before. Check and see if "cpp" is in<br>/usr/bin/cpp path. Sometime it is in /lib/cpp depending on your
<br>operating system. You can check the location of cpp by typing "which<br>cpp" on the command line.<br><br>Hope this help, Sukit<br><br>Kushal Seth wrote:<br>><br>><br>> HI all !<br>> I am gettting this error while doing my simulation... for the
<br>> bilayers<br>><br>><br>><br>> Back Off! I just backed up emout-nowater.mdp to<br>> ./#emout-nowater.mdp.1#<br>> checking input for internal consistency...<br>> ...ling /usr/bin/cpp
<br>> : No such file or directory<br>> cpp exit code: 32512<br>> -I/usr/local/gromacs/share/gromacs/top mytop-nowater1.top ><br>> gromppdriwHo'<br>> ' command is defined in the .mdp file
<br>> processing topology...<br>> processing coordinates...<br>> -------------------------------------------------------<br>> Program grompp, VERSION 3.3<br>> Source code file: grompp.c, line: 427
<br>><br>> Fatal error:<br>> number of coordinates in coordinate file<br>> (binaryCR-Ochol-box-largeZ.pdb, 10280)<br>> does not match topology (mytop-nowater1.top, 0)<br>><br>
> I would appreciate if anyone can help me out with this.<br>> Thanks<br>> Kris<br>><br>><br>> ------------------------------------------------------------------------<br>><br>> _______________________________________________
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