Hi Debashis,<br>
<br>
Parameters and .pdb file are different things. To generate a structure
for dialanine you can use prodrg, pymol, write it by hand or search the
web. If you want to use your own force field parameters you have to
write a .itp file. Check the gromacs manual for that.<br>
<br>
Tsjerk<br><br><div><span class="gmail_quote">On 6/8/06, <b class="gmail_sendername">Debashis Dutta</b> <<a href="mailto:ddutta@email.unc.edu">ddutta@email.unc.edu</a>> wrote:</span><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi,<br> I am seeking help in creating the .pdb file for a dialanine<br>molecule using the databank. I have the parameters for a single alanine<br>molecule. how do i go from here.<br><br>Thanks<br>Debashis<br><br><br>
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