Hi Lali,<br><br>In VMD you can view .xtc files directly. Check the gromacs archive or the VMD manual. Besides, you can use trjconv with -b and -e to extract a certain time frame. Please check the Gromacs manual or try trjconv -h (also to find out what else is possible).
<br><br>Best regards,<br><br>Tsjerk<br><br><div><span class="gmail_quote">On 6/13/06, <b class="gmail_sendername">lalitha selvam</b> <<a href="mailto:hayagrivar@hotmail.com">hayagrivar@hotmail.com</a>> wrote:</span>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">hello sir,<br><br>1.i ran simulation for 2 ns.....i want to view the structure from 1500 to<br>
2000 frames at every 25 ps.how to get it in pdb strucutres of the above<br>wanted frames.<br><br>2.with the use of trjconv i had one pdb file converted from one frame. i'm<br>viewing that structure with VMD, but when i'm trying to load in NOC software
<br>i'm not able to view.cant we view that pdb structures converted from gromacs<br>in other visualization software.<br><br>please anyone explain me.<br><br>regards<br>lali.s<br><br>_________________________________________________________________
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<br>University of Groningen<br>Nijenborgh 4<br>9747AG Groningen, The Netherlands<br>+31 50 363 4336<br>