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<P>Hi,</P>
<P>I'm hoping to utilize gromacs' analysis tools to analyse my Amber trajectories. Specifically, I'm interested in the clustering module.</P>
<P>I was wondering if pdb2gmx is able to convert Amber trajectories to gromacs ones such that the analysis tools (especially g_cluster can be used..</P>
<P>I'm aware of that the units in Gromacs is nm while that in Amber is Angstroms, would pdb2gmx take care of that or maybe that might not matter if I just want to do clustering?</P>
<P>Thanks!</P>
<P>Jamie<BR></P>
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