<div>Hi all,</div>
<div> </div>
<div>I'm trying to install gromacs-3.3.1. I first installed fftw-3.0.1 with --enable-float and setenv CPPFLAGS and LDFLAGS to my fftw include/ and lib/ directories. ./configure successfully passed all checking (seems so) but it stopped at '
config.status: executing depfiles commands' and didn't print 'Gromacs is ready to compile. Binary and library files are ...' such stuff. If I try to 'make', it'll go into some infinite loop: </div>
<div>keep printing sentences from </div>
<div>' /bin/sh ./config.status<br>config.status: creating Makefile'</div>
<div> ...to ...</div>
<div>'config.status: src/config.h is unchanged<br>config.status: executing depfiles commands'</div>
<div> </div>
<div>No matter it's just 'make' or 'make install' or 'make distclean', it only prints the loop of the above 'config.status'.</div>
<div> </div>
<div>I'm posting the log of configure so that some experienced users may help me find the error. I appreciate any response!</div>
<div> </div>
<div>checking build system type... i686-pc-linux-gnu<br>checking host system type... i686-pc-linux-gnu<br>checking for a BSD-compatible install... /usr/bin/install -c<br>checking whether build environment is sane... yes<br>
checking for gawk... gawk<br>checking whether make sets $(MAKE)... yes<br>checking how to create a ustar tar archive... pax<br>checking for cc... cc<br>checking for C compiler default output file name... a.out<br>checking whether the C compiler works... yes
<br>checking whether we are cross compiling... no<br>checking for suffix of executables...<br>checking for suffix of object files... o<br>checking whether we are using the GNU C compiler... yes<br>checking whether cc accepts -g... yes
<br>checking for cc option to accept ANSI C... none needed<br>checking for style of include used by make... GNU<br>checking dependency style of cc... gcc3<br>checking how to run the C preprocessor... cc -E<br>checking whether cc accepts -O3... yes
<br>checking whether cc accepts -malign-double... yes<br>checking whether cc accepts -funroll-all-loops... yes<br>checking whether cc accepts -O3 -fomit-frame-pointer -finline-functions -Wall -<br>Wno-unused -malign-double -funroll-all-loops... yes
<br>checking whether byte ordering is bigendian... no<br>checking for egrep... grep -E<br>checking for ANSI C header files... yes<br>checking for sys/types.h... yes<br>checking for sys/stat.h... yes<br>checking for stdlib.h..
. yes<br>checking for string.h... yes<br>checking for memory.h... yes<br>checking for strings.h... yes<br>checking for inttypes.h... yes<br>checking for stdint.h... yes<br>checking for unistd.h... yes<br>checking for int... yes
<br>checking size of int... 4<br>checking for long int... yes<br>checking size of long int... 4<br>checking for long long int... yes<br>checking size of long long int... 8<br>checking floating-point format... IEEE754 (little-endian byte and word order)
<br>checking for a BSD-compatible install... /usr/bin/install -c<br>checking whether ln -s works... yes<br>checking whether make sets $(MAKE)... (cached) yes<br>checking for a sed that does not truncate output... /bin/sed
<br>checking for ld used by cc... /usr/bin/ld<br>checking if the linker (/usr/bin/ld) is GNU ld... yes<br>checking for /usr/bin/ld option to reload object files... -r<br>checking for BSD-compatible nm... /usr/bin/nm -B<br>
checking how to recognise dependent libraries... pass_all<br>checking dlfcn.h usability... yes<br>checking dlfcn.h presence... yes<br>checking for dlfcn.h... yes<br>checking for g++... g++<br>checking whether we are using the GNU C++ compiler... yes
<br>checking whether g++ accepts -g... yes<br>checking dependency style of g++... gcc3<br>checking how to run the C++ preprocessor... g++ -E<br>checking the maximum length of command line arguments... 32768<br>checking command to parse /usr/bin/nm -B output from cc object... ok
<br>checking for objdir... .libs<br>checking for ar... ar<br>checking for ranlib... ranlib<br>checking for strip... strip<br>checking if cc supports -fno-rtti -fno-exceptions... yes<br>checking for cc option to produce PIC... -fPIC
<br>checking if cc PIC flag -fPIC works... yes<br>checking if cc static flag -static works... yes<br>checking if cc supports -c -o file.o... yes<br>checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes
<br>checking dynamic linker characteristics... GNU/Linux ld.so<br>checking how to hardcode library paths into programs... immediate<br>checking whether stripping libraries is possible... yes<br>checking if libtool supports shared libraries... yes
<br>checking whether to build shared libraries... no<br>checking whether to build static libraries... yes<br>configure: creating libtool<br>appending configuration tag "CXX" to libtool<br>checking for ld used by g++... /usr/bin/ld
<br>checking if the linker (/usr/bin/ld) is GNU ld... yes<br>checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes<br>checking for g++ option to produce PIC... -fPIC<br>checking if g++ PIC flag -fPIC works... yes
<br>checking if g++ static flag -static works... yes<br>checking if g++ supports -c -o file.o... yes<br>checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes<br>checking dynamic linker characteristics... GNU/Linux
ld.so<br>checking how to hardcode library paths into programs... immediate<br>appending configuration tag "F77" to libtool<br>checking for special C compiler options needed for large files... no<br>checking for _FILE_OFFSET_BITS value needed for large files... 64
<br>checking for _LARGE_FILES value needed for large files... no<br>checking for _LARGEFILE_SOURCE value needed for large files... 1<br>checking for fseeko... yes<br>checking for sqrt in -lm... yes<br>checking for fftw3.h..
. yes<br>checking for main in -lfftw3f... yes<br>checking rpc/rpc.h usability... yes<br>checking rpc/rpc.h presence... yes<br>checking for rpc/rpc.h... yes<br>checking for rpc/xdr.h... yes<br>checking for xdr_float in -lnsl... yes
<br>checking for working memcmp... yes<br>checking return type of signal handlers... void<br>checking for vprintf... yes<br>checking for _doprnt... no<br>checking if malloc debugging is wanted... no<br>checking for strcasecmp... yes
<br>checking for strdup... yes<br>checking for bool... no<br>checking for X... no<br>checking for Motif... libraries (none), headers (none)<br>checking for libXext and libXp... no<br>checking for only libXext... no<br>checking
limits.h usability... yes<br>checking limits.h presence... yes<br>checking for limits.h... yes<br>checking for strings.h... (cached) yes<br>checking for unistd.h... (cached) yes<br>checking for unistd.h... (cached) yes<br>
checking for an ANSI C-conforming const... yes<br>checking for size_t... yes<br>checking whether struct tm is in sys/time.h or time.h... time.h<br>checking for uid_t in sys/types.h... yes<br>checking for inline... inline<br>
checking whether your compiler can handle assembly files (*.s)... yes<br>checking whether as fully supports ia32 SSE... yes<br>checking whether as fully supports ia32 3DNow! instructions... yes<br>checking whether byte ordering is bigendian... (cached) no
<br>checking if the compiler supports gcc inline assembly... yes<br>checking if the compiler supports MSVC inline assembly... no<br>configure: creating ./config.status<br>config.status: creating Makefile<br>config.status: creating src/Makefile
<br>config.status: creating src/gmxlib/Makefile<br>config.status: creating src/gmxlib/gmx_blas/Makefile<br>config.status: creating src/gmxlib/gmx_lapack/Makefile<br>config.status: creating src/gmxlib/nonbonded/Makefile<br>
config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile<br>config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile<br>config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile<br>
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile<br>config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile<br>config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile
<br>config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile<br>config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile</div>
<div>config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile<br>config.status: creating include/Makefile<br>config.status: creating include/types/Makefile<br>config.status: creating src/mdlib/Makefile
<br>config.status: creating src/kernel/Makefile<br>config.status: creating src/tools/Makefile<br>config.status: creating src/ngmx/Makefile<br>config.status: creating src/contrib/Makefile<br>config.status: creating scripts/Makefile
<br>config.status: creating admin/Makefile<br>config.status: creating share/Makefile<br>config.status: creating share/tutor/Makefile<br>config.status: creating share/tutor/gmxdemo/Makefile<br>config.status: creating share/tutor/nmr1/Makefile
<br>config.status: creating share/tutor/nmr2/Makefile<br>config.status: creating share/tutor/water/Makefile<br>config.status: creating share/tutor/mixed/Makefile<br>config.status: creating share/tutor/methanol/Makefile<br>
config.status: creating share/tutor/speptide/Makefile<br>config.status: creating share/template/Makefile<br>config.status: creating share/top/Makefile<br>config.status: creating share/html/Makefile<br>config.status: creating share/html/images/Makefile
<br>config.status: creating share/html/online/Makefile<br>config.status: creating man/Makefile<br>config.status: creating man/man1/Makefile<br>config.status: creating src/config.h<br>config.status: executing depfiles commands
</div>
<p>Thanks a lot!!!</p>
<div><br><br> </div>