Hi,<br> maybe I am misunderstanding either the manual or the topic.. but - in my world -<br> I never stop being puzzled by the part of chapt 6 in the manual which apparently<br> says that such distance constraining is possible even though it (seems) to be<br> secretly known that it is _not_ possible unless one uses the method suggested<br> below.<br> I believe, I suggest adding a comment in the manual.<br> <br> -Soren<br><br><b><i>Tsjerk Wassenaar <tsjerkw@gmail.com></i></b> skrev:<blockquote class="replbq" style="border-left: 2px solid rgb(16, 16, 255); margin-left: 5px; padding-left: 5px;"> Hi Kanin,<br><br>The only way to get away with that is to merge your two parts to form<br>one molecule, with the only connection being a distance_restraint (or<br>another bonded term if you want to emulate bond-like behaviour such as<br>a salt-bridge).<br><br>Best,<br><br>Tsjerk<br><br>On 9/11/06, kanin wichapong <kwichapong
@gmail.com=""> wrote:<br>> Dear All<br>> I would like to know how to constraint the distance between the<br>> different molecule, ex. the ligand and the protein. As far as I know<br>> whatever to do the constraint, distance, angle dihedral, it can do just in<br>> the same molecule.<br>> Thank you in advance for all of your help.<br>><br>> With Best all regard,<br>> Kanin<br>><br>> _______________________________________________<br>> gmx-users mailing list gmx-users@gromacs.org<br>> http://www.gromacs.org/mailman/listinfo/gmx-users<br>> Please don't post (un)subscribe requests to the list. Use the<br>> www interface or send it to gmx-users-request@gromacs.org.<br>> Can't post? Read<br>> http://www.gromacs.org/mailing_lists/users.php<br>><br>><br><br><br>-- <br><br>Tsjerk A. Wassenaar, M.Sc.<br>Groningen Biomolecular Sciences and Biotechnology Institute (GBB)<br>Dept. of Biophysical
Chemistry<br>University of Groningen<br>Nijenborgh 4<br>9747AG Groningen, The Netherlands<br>+31 50 363 4336<br>_______________________________________________<br>gmx-users mailing list gmx-users@gromacs.org<br>http://www.gromacs.org/mailman/listinfo/gmx-users<br>Please don't post (un)subscribe requests to the list. Use the <br>www interface or send it to gmx-users-request@gromacs.org.<br>Can't post? Read http://www.gromacs.org/mailing_lists/users.php<br></kwichapong></blockquote><br>