Thanks everyone :)<br>Finally I've got the map using xpm2ps<br>I'm new to gromacs and Linux, so it will take some time to learn the script language.<br> <br><br><div><span class="gmail_quote">On 10/1/06, <b class="gmail_sendername">
Erik Marklund</b> <<a href="mailto:erikm@xray.bmc.uu.se">erikm@xray.bmc.uu.se</a>> wrote:</span><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
----- Original Message -----<br>From: "David van der Spoel" <<a href="mailto:spoel@xray.bmc.uu.se">spoel@xray.bmc.uu.se</a>><br>To: "Discussion list for GROMACS users" <<a href="mailto:gmx-users@gromacs.org">
gmx-users@gromacs.org</a>><br>Sent: Saturday, September 30, 2006 2:37 AM<br>Subject: Re: [gmx-users] HBond frequency<br><br><br>> liu xin wrote:<br>>> Thanks, but when ever I used ACDsee to visualize the generated
hbmap.xpm,<br>>> I've got nothing, and ACDsee keeps on telling me that "Bad or<br>>> unrecognized image header".<br>>><br>> Try the gimp or use xpm2ps first.<br>><br>> --<br>> David.
<br><br>Or analyze the data by other means. The image data is uncompressed and<br>stored row-wise in the file, making it relatively easy to extract, in your<br>case, hbond frequencies, using most any scripting language.<br>
<br>/Erik<br><br>> ________________________________________________________________________<br>> David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,<br>> Dept. of Cell and Molecular Biology, Uppsala University.
<br>> Husargatan 3, Box 596, 75124 Uppsala, Sweden<br>> phone: 46 18 471 4205 fax: 46 18 511 755<br>> <a href="mailto:spoel@xray.bmc.uu.se">spoel@xray.bmc.uu.se</a> <a href="mailto:spoel@gromacs.org">spoel@gromacs.org
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