Hi Gmx-users,<br>i am facing this problem i really don;t get it. i am trying to compare the rmsd of two strucures and when i use g_confrms_ d i the following options for the two structures<br>
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<p><span style="font-size: 10pt;">Group 0 (
System) has 4276 elements<br>
Group 1 ( Protein) has 4276 elements<br>
Group 2 ( Protein-H) has 3260 elements<br>
Group 3 ( C-alpha) has 388 elements<br>
Group 4 ( Backbone) has 1164 elements<br>
Group 5 ( MainChain) has 1556 elements<br>
Group 6 (MainChain+Cb) has 1932 elements<br>
Group 7 ( MainChain+H) has 1932 elements<br>
Group 8 ( SideChain) has 2344 elements<br>
Group 9 ( SideChain-H) has 1704 elements<br>
Group 10 ( Protein) has 4276 elements</span></p>
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<p><span style="font-size: 10pt;">Group 0 (
System) has 1198 elements<br>
Group 1 ( Protein) has 1053 elements<br>
Group 2 ( Protein-H) has 802 elements<br>
Group 3 ( C-alpha) has 96 elements<br>
Group 4 ( Backbone) has 288 elements<br>
Group 5 ( MainChain) has 385 elements<br>
Group 6 (MainChain+Cb) has 478 elements<br>
Group 7 ( MainChain+H) has 478 elements<br>
Group 8 ( SideChain) has 575 elements<br>
Group 9 ( SideChain-H) has 417 elements<br>
Group 10 ( Prot-Masses) has 1053 elements<br>
Group 11 ( Non-Protein) has 145 elements<br>
Group 12 ( NA) has
1 elements<br>
Group 13 ( HOH) has 144
elements<br>
Group 14 ( Other) has 145 elements<br>
Group 15 ( Protein) has 1053 elements</span></p>
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<p>i am able to calculate all options however for the "C-alpha" it keeps on giving me an error and the error is "You selected groups with different number of atoms." <br></p>if you look at all other options also have different number of atoms, so howcome i don;t get this error message in other options. is there really problem here or i am missing something. pzl help thanks.
<br><br>Arindam Ganguly<br><p><br></p>
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