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<div> Dear Users,<br>
<br>
I have compiled in a non working machine g_dist with gcc version
3.2.3 20030502 (Red Hat Linux 3.2.3-55.fc5). Now is working.<br>
Then it seem to be the compiler gcc version 4.1.1 20060525 (Red Hat
4.1.1-1) which come with fedora 5 which leads to the problem. Well I'm
not sure if it's necessary to work in that incompatibility.<br>
<br>
Thanks<br>
Hector Martínez-Seara Monné<br>
University of Barcelona<br>
<br>
</div>
-----Original Message-----<br>
From: hseara@netscape.net<br>
To: gmx-users@gromacs.org<br>
Sent: Mon, 16 Oct 2006 9:54 AM<br>
Subject: [gmx-users] g_dist problem<br>
<br>
<div id="AOLMsgPart_3_bddb2b5b-2afe-4a48-ad06-21687ce3c135">
<div> Dear Users,<br>
<br>
I am trying to use g_dist to analize some dinamys. The problem is that
this program freeze just after selecting the to groups to calculate the
distance inbetween the mass centers with out any error and consuming
100% cpu. The versions with the problem are 3.3.x. The analasis using
the same files in another computers works perfectly. The g_dist
coming with the version 3.2.1 also works fine, but i can't use it with
the tpr files done by version 3.3.1. The diference in betwen the
machines are not many. I will describe both:<br>
<br>
NOT WORKING<br>
Gromacs 3.3.1 simple precision<br>
dual xeon 3.0 hz Dell 1800<br>
fedora core 5 kernel: 2.6.17-1.2139_FC5smp<br>
mpi-2 installed ( but I thing not used )<br>
sge queu system working but I send he job intercatively<br>
gcc version 4.1.1 20060525 (Red Hat 4.1.1-1)<br>
<br>
NOT WORKING<br>
Gromacs 3.3.1 simple precision<br>
Intel Dualcore 3.2 hz Dell dimension 9150<br>
fedora core 5 kernel: 2.6.17--1.2187_FC5smp<br>
no mpi<br>
simple workstaion<br>
gcc version 4.1.1 20060525 (Red Hat 4.1.1-1)<br>
<br>
WORKING ( 2 differet machines)<br>
Gromacs 3.3.1 simple precision<br>
P4 3.0hz<br>
fedora core 4 kernel: 2.6.15-1.1831_FC4smp<br>
no mpi<br>
simple workstaion<br>
gcc versió 4.0.2 20051125 (Red Hat 4.0.2-8)<br>
<br>
Any one knows what is happening?<br>
<br>
</div>
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