Hi <br><br>I am trying to simulate a protein DNA complex but I am stuck at the pdb2gmx stage as it gets stuck when it encounters a nucleotide.<br><br clear="all">Program pdb2gmx, VERSION 3.3<br>Source code file: resall.c, line: 438
<br><br>Fatal error:<br>Residue 'C' not found in residue topology database<br><br>The pdb segment is as follows:<br><br>ATOM 1239 NZ LYS B 513 -24.159 16.372 -25.774 1.00 51.42 N<br>ATOM 1249 N1 C C 1 -
10.253 8.018 40.704 1.00 25.86 N<br><br>Has anyone encountered this problem before?<br><br>Regards<br>Debo<br><br>-- <br>---------------------------------------------<br>Debojyoti Dutta, PhD (USC)<br><a href="http://catarina.usc.edu/~ddutta">
http://catarina.usc.edu/~ddutta</a> <br>---------------------------------------------<br>