Thanks for your suggestions. I did all you guys said, but still got the same configuration error. Very frustrated. And the gromacs.org website is unreachable since Friday:<br><br><b>Fatal error</b>: main() [<a href="http://www.gromacs.org/function.require">function.require</a>]: Failed opening required '/includes/version.php' (include_path='.:/usr/share/pear') in <b>/data/gmx/www-gmx/includes/joomla.php</b> on line <b>71<br><br>So I cannot access the mailing archive.......<br><br>Helps needed!<br><br>Cherry<br></b><br><b><i>Michael John Hanby <mhanby@uab.edu></i></b> wrote:<blockquote class="replbq" style="border-left: 2px solid rgb(16, 16, 255); margin-left: 5px; padding-left: 5px;"> Also, verify you compile gromacs with the same compiler used for FFTW.<br>If you've already done that, you might try setting<br><br>export LD_LIBRARY_PATH=$FFTWINSTALL/lib:$LD_LIBRARY_PATH<br><br>And add the $FFTWINSTALL/include and lib to your CPPFLAGS and
LDFLAGS<br>etc...<br><br>-----Original Message-----<br>From: gmx-users-bounces@gromacs.org<br>[mailto:gmx-users-bounces@gromacs.org] On Behalf Of David van der Spoel<br>Sent: Tuesday, December 26, 2006 9:10 AM<br>To: Discussion list for GROMACS users<br>Subject: Re: [gmx-users] configuration error<br><br>Cherry Y. Yates wrote:<br>> Dear gromacs developlers,<br>> <br>> When I tried to parallelize GROMACS with intel<br>> fortran/C compiler on a Athlon cluster, I met this<br>> kind of error:<br>> <br>> $ ./configure --enable-mpi<br>> .........<br>> checking size of int... configure: error: cannot<br>> compute sizeof (int), 77<br>> <br>> What is wrong? Needs help!<br>> Thanks,<br>> <br>> Cherry <br>> <br>> <br>> __________________________________________________<br>> Do You Yahoo!?<br>> Tired of spam? Yahoo! Mail has the best spam protection around <br>> http://mail.yahoo.com <br>>
_______________________________________________<br>> gmx-users mailing list gmx-users@gromacs.org<br>> http://www.gromacs.org/mailman/listinfo/gmx-users<br>> Please don't post (un)subscribe requests to the list. Use the <br>> www interface or send it to gmx-users-request@gromacs.org.<br>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php<br>check archives. you probably need to upgrade the fftw libraries.<br><br>-- <br>David.<br>________________________________________________________________________<br>David van der Spoel, PhD, Assoc. Prof., Molecular Biophysics group,<br>Dept. of Cell and Molecular Biology, Uppsala University.<br>Husargatan 3, Box 596, 75124 Uppsala, Sweden<br>phone: 46 18 471 4205 fax: 46 18 511 755<br>spoel@xray.bmc.uu.se spoel@gromacs.org http://folding.bmc.uu.se<br>++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++<br>_______________________________________________<br>gmx-users mailing list
gmx-users@gromacs.org<br>http://www.gromacs.org/mailman/listinfo/gmx-users<br>Please don't post (un)subscribe requests to the list. Use the <br>www interface or send it to gmx-users-request@gromacs.org.<br>Can't post? Read http://www.gromacs.org/mailing_lists/users.php<br>_______________________________________________<br>gmx-users mailing list gmx-users@gromacs.org<br>http://www.gromacs.org/mailman/listinfo/gmx-users<br>Please don't post (un)subscribe requests to the list. Use the<br>www interface or send it to gmx-users-request@gromacs.org.<br>Can't post? Read http://www.gromacs.org/mailing_lists/users.php<br></blockquote><br><p> __________________________________________________<br>Do You Yahoo!?<br>Tired of spam? Yahoo! Mail has the best spam protection around <br>http://mail.yahoo.com