<HTML><HEAD><META content="text/html; charset=x-user-defined" http-equiv="Content-Type"><style type="text/css"><!--.MailHeader { font-family: "Arial"; font-size: 8pt; color: #000000; font-style: normal; font-weight: normal; text-decoration: none; }//--></style></HEAD><BODY><br ><font size="2" face="Arial">
<TABLE STYLE="border-color: blue; border-left: 1px solid blue; padding-left: 5px;">
<tbody>
<TR>
<TD>Dear gmx_users <br >In particular to Dr.B.Nataraj <br >(I am doing this as I donot have his email address)<br >I have found the program 'main.c' in gmxlib folder and I corrected the lines 247 in main.c I could compile further then I got 4 errors in 'gmx_fftw_fftw3.c ' about ' pc += 8; ...../<br >when I looked in the gmx_users list I found a similar thread of mails written by Dr. B.Nataraj around April 2006 who I presume had a similar problem in installing the package on SGI, and accordingly I went about correcting the errors as they occured . However now I have got around 20 errors in the program 'gmx_chi.c' for which there are no corrections and and the thread is stopped on this problem. I would like to know how he could solve the problem of installation of gromacs 3.3.1 on the SGI IRIX after that. Whether the problem got solved or not ? I would like to request him to give me some suggestions in this regard. I am desperate in installing it on SGI using MIPSpro compilers (cc) before I switch over to gcc as this would take time. <br ><br >Thanks in advance<br ><br >Sharada<br ><br ><strong><em><br >-- Original Message --</em></strong><br >From: sharada <sharada@ccmb.res.in><br >To: Discussion list for GROMACS users <gmx-users@gromacs.org><br >Date: Tue, 16 Jan 2007 15:43:32 +0530 (IST)<br >Subject: Re: [gmx-users] error while compilation of Gromacs 3.3.1.....<br ><br >
<meta http-equiv="Content-Type" content="text/html; charset=x-user-defined" >
<meta content="text/html; charset=x-user-defined" http-equiv="Content-Type" ><br ><font size="2" face="Arial">
<TABLE STYLE="border-color: blue; border-left: 1px solid blue; padding-left: 5px;">
<tbody>
<TR>
<TD>Dear Drs. Martin Hofling and Mark Abraham,<br >I agree with your suggestions since I have gone through the gmx_users previous mails written by others in this line where in compilation on SGI machines didnot go off without problems. In any case I would like to bring to your notice once again to the <SPAN STYLE="font-weight: bold;">errors</SPAN> I got when I was compiling Gromacs 3.3.1<br > <font size="2" face="Arial"><SPAN STYLE="color: rgb(255, 0, 255);">cc-1197 cc: WARNING File = main.c, Line = 247</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> The indicated format string requires additional arguments.</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> "%s (%s)\n\n\n",BUILD_TIME,BUILD_USER,BUILD_MACHINE);</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> ^</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);">cc-1018 cc: ERROR File = main.c, Line = 247</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> An unmatched left parentheses "(" appears in an expression.</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> "%s (%s)\n\n\n",BUILD_TIME,BUILD_USER,BUILD_MACHINE);</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> ^</SPAN><SPAN STYLE="color: rgb(255, 0, 255);"><br >cc-1008 cc: ERROR File = main.c, Line = 247</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> A new-line character appears inside a string literal.</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> "%s (%s)\n\n\n",BUILD_TIME,BUILD_USER,BUILD_MACHINE);</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> ^<br ></SPAN></font>
<DIV STYLE="text-align: justify;"><font size="2" face="Arial"><span style="color: rgb(255, 0, 255);"></span></font>The above lines clearly indicates that there is an extra new-line character and also unmatched left <br >paranthesis in the formats statements in line number 247. I strongly feel that if these are corrected then may be my compilation would go smoothly, however I donot know where is the 'main.c' program. If I am right then I would like to do this first, if you can tell me where to look for main.c or is it possible ?<br ><br >with regards <br >sharada<br ><font size="2" face="Arial"><span style="color: rgb(255, 0, 255);"></span></font></DIV>
<strong><em>"<br >-- Original Message --</em></strong><br >From: sharada <sharada@ccmb.res.in><br >To: gmx-users@gromacs.org<br >Date: Thu, 11 Jan 2007 16:22:58 +0530 (IST)<br >Subject: [gmx-users] error while compilation of Gromacs 3.3.1.....<br ><br >
<meta http-equiv="Content-Type" content="text/html; charset=x-user-defined" >Dear Gromacs users,<br ><br >I am installing the Gromacs version 3.3.1 on the SGI Octane with IRIX 6.5 R12000<br >system. I could successfully installed fftw package and trying the compile gromacs.<br >I am getting the following at the end of the 'make' command :<br ><br >........<br ><SPAN STYLE="font-family: arial; font-style: italic; font-weight: bold;">These are the last few lines after the make command</SPAN><br >i<SPAN STYLE="color: rgb(255, 0, 255);">nclude -DGMXLIBDIR=\"/usr/local/gromacs/share/top\" -I/usr/local/include -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3 -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 -D__INLINE_INTRINSICS -c -o main.lo main.c</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> cc -DHAVE_CONFIG_H -I. -I. -I../../src -I../../include "-DGMXLIBDIR=\"/usr/local/gromacs/share/top\"" -I/usr/local/include -r12000 -mips4 -O3 -OPT:IEEE_arithmetic=3 -OPT:rsqrt=ON -SWP:loop_overhead -INLINE:=ON -LNO:opt=1 -LNO:ou_further=3 -OPT:Olimit=0:roundoff=3:alias=typed -woff 1174 -D__INLINE_INTRINSICS -c main.c -Wp,-MDupdate,.deps/main.TPlo -o main.o</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);">cc-1197 cc: WARNING File = main.c, Line = 247</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> The indicated format string requires additional arguments.</SPAN><br style="color: rgb(255, 0, 255);" ><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> "%s (%s)\n\n\n",BUILD_TIME,BUILD_USER,BUILD_MACHINE);</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> ^</SPAN><br style="color: rgb(255, 0, 255);" ><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);">cc-1018 cc: ERROR File = main.c, Line = 247</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> An unmatched left parentheses "(" appears in an expression.</SPAN><br style="color: rgb(255, 0, 255);" ><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> "%s (%s)\n\n\n",BUILD_TIME,BUILD_USER,BUILD_MACHINE);</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> ^</SPAN><br style="color: rgb(255, 0, 255);" ><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);">cc-1008 cc: ERROR File = main.c, Line = 247</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> A new-line character appears inside a string literal.</SPAN><br style="color: rgb(255, 0, 255);" ><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> "%s (%s)\n\n\n",BUILD_TIME,BUILD_USER,BUILD_MACHINE);</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);"> ^</SPAN><br style="color: rgb(255, 0, 255);" ><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);">2 errors detected in the compilation of "main.c".</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);">*** Error code 1 (bu21)</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);">*** Error code 1 (bu21)</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);">*** Error code 1 (bu21)</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);">*** Error code 1 (bu21)</SPAN><br style="color: rgb(255, 0, 255);" ><SPAN STYLE="color: rgb(255, 0, 255);">*** Error code 1 (bu21)</SPAN><br ><br >How can I correct this error?Where is the main.c ? Kindly tell me if I have to set some parameters while compilation. <br ><br >regards<br >sharada_______________________________________________"<br >gmx-users mailing list gmx-users@gromacs.org<br >http://www.gromacs.org/mailman/listinfo/gmx-users<br >Please don't post (un)subscribe requests to the list. Use the <br >www interface or send it to gmx-users-request@gromacs.org.<br >Can't post? Read http://www.gromacs.org/mailing_lists/users.php</TD>
</TR>
</tbody>
</TABLE>
</font>_______________________________________________<br >gmx-users mailing list gmx-users@gromacs.org<br >http://www.gromacs.org/mailman/listinfo/gmx-users<br >Please don't post (un)subscribe requests to the list. Use the <br >www interface or send it to gmx-users-request@gromacs.org.<br >Can't post? Read http://www.gromacs.org/mailing_lists/users.php</TD>
</TR>
</tbody>
</TABLE>
</font></BODY></HTML>