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<p class=MsoPlainText>I'm trying to compile Gromacs 3.2.1 (a user requested
this version specifically). The configure succeeds, however make fails with:<o:p></o:p></p>
<p class=MsoPlainText>/bin/sh: -c: line 0: unexpected EOF while looking for
matching `"'<o:p></o:p></p>
<p class=MsoPlainText>/bin/sh: -c: line 1: syntax error: unexpected end of file<o:p></o:p></p>
<p class=MsoPlainText><o:p> </o:p></p>
<p class=MsoPlainText>The system is a 64bit RHEL 4 workstation, I'm using Intel
Compilers: v 9.1.042<o:p></o:p></p>
<p class=MsoPlainText><o:p> </o:p></p>
<p class=MsoPlainText>Any idea what the heck it's complaining about? Here's my
configure statement:<o:p></o:p></p>
<p class=MsoPlainText>./configure CC=icc CXX=icpc FC=ifort F77=ifort F90=ifort
--enable-sse --enable-fortran
--prefix=/share/apps/gromacs/intel/gromacs-3.2.1-s64<o:p></o:p></p>
<p class=MsoPlainText><o:p> </o:p></p>
<p class=MsoPlainText><o:p> </o:p></p>
<p class=MsoPlainText>Here's the last several lines of the make output:<o:p></o:p></p>
<p class=MsoPlainText>============================================================================================================<o:p></o:p></p>
<p class=MsoPlainText>if /bin/sh ../../libtool --mode=compile icc
-DHAVE_CONFIG_H -I. -I.<o:p></o:p></p>
<p class=MsoPlainText>-I../../src -I/usr/X11R6/include -I../../include
-DGMXLIBDIR=\"/share/apps/gromac s/intel/gromacs-3.2.1-s64/share/top\"<o:p></o:p></p>
<p class=MsoPlainText>-I/share/apps/intel/cce/9.1.042/include<o:p></o:p></p>
<p class=MsoPlainText>-I/share/apps/fftw/intel/fftw-2.1.5-s64/include
-I/usr/local/include -I/<o:p></o:p></p>
<p class=MsoPlainText>usr/include/libxml2 -O3 -I/usr/include/libxml2 -MT
widget.lo -MD -MP -MF ".deps/widget.Tpo" \<o:p></o:p></p>
<p class=MsoPlainText> -c -o widget.lo `test -f 'widget.c' || echo
'./'`widget.c; \ then mv -f ".deps/widget.Tpo"
".deps/widget.Plo"; \ else rm -f ".deps/widget.Tpo"; exit
1; \ fi icc -DHAVE_CONFIG_H -I. -I. -I../../src -I/usr/X11R6/include
-I../../include -DGMXLIBDIR=\"/share/apps/gromacs/intel/gromacs-3.2.1-s64/share/top\"<o:p></o:p></p>
<p class=MsoPlainText>-I/
share/apps/intel/cce/9.1.042/include<o:p></o:p></p>
<p class=MsoPlainText>-I/share/apps/fftw/intel/fftw-2.1.5-s64/include
-I/usr/local/include<o:p></o:p></p>
<p class=MsoPlainText>-I/usr/include/libxml2 -O3
-I/usr/include/li bxml2 -MT widget.lo<o:p></o:p></p>
<p class=MsoPlainText>-MD -MP -MF .deps/widget.Tpo -c widget.c -o widget.o
/bin/sh ../../libtool --mode=link icc -O3 -I/usr/include/libxml2
-L/share/apps/intel/cce/9.1.042/lib<o:p></o:p></p>
<p class=MsoPlainText>-L/share/apps/fftw/intel/fftw-2.1.5-s64/lib
-L/ usr/X11R6/lib -o<o:p></o:p></p>
<p class=MsoPlainText>libgmx.la -rpath<o:p></o:p></p>
<p class=MsoPlainText>/share/apps/gromacs/intel/gromacs-3.2.1-s64/x86_64-unknown-linux-gnu/lib<o:p></o:p></p>
<p class=MsoPlainText>-version-info 3:0:0 3dview.lo
atomprop.lo block_tx.lo bondfree.lo<o:p></o:p></p>
<p class=MsoPlainText>calcgrid.lo calch.lo confio.lo copyrite.lo disre.lo
do_fit.lo enxio.lo<o:p></o:p></p>
<p class=MsoPlainText>ewald_util.lo fatal.lo ffscanf.lo filenm.lo futil.lo
gb util.lo<o:p></o:p></p>
<p class=MsoPlainText>fnbf.lo gmxfio.lo ifunc.lo index.lo cinvsqrtdata.lo
invblock.lo macros.lo orires.lo main.lo maths.lo matio.lo mshift.lo mvdata.lo<o:p></o:p></p>
<p class=MsoPlainText>mvxvf.lo nam es.lo
network.lo nrama.lo nrjac.lo nrnb.lo pargs.lo<o:p></o:p></p>
<p class=MsoPlainText>pbc.lo pdbio.lo princ.lo rando.lo random.lo gmx_random.lo
rbin.lo<o:p></o:p></p>
<p class=MsoPlainText>readinp.lo replace.lo rmpbc.lo s
hift_util.lo sortwater.lo<o:p></o:p></p>
<p class=MsoPlainText>smalloc.lo stat.lo statutil.lo strdb.lo string2.lo
symtab.lo tpxio.lo<o:p></o:p></p>
<p class=MsoPlainText>trnio.lo trxio.lo txtdump.lo typedefs.lo viewit.lo
wgm s.lo<o:p></o:p></p>
<p class=MsoPlainText>wman.lo writeps.lo xdrd.lo xtcio.lo xvgr.lo detectcpu.lo
libxdrf.lo vec.lo dihres.lo xmlio.lo innerf.lo f77_wrappers.lo mgmx.lo
widget.lo<o:p></o:p></p>
<p class=MsoPlainText>-L/usr/ X11R6/lib64
-lnsl -lsrfftw -lsfftw -lXm -lXt -lSM -lICE<o:p></o:p></p>
<p class=MsoPlainText>-lXext -lXp -lX11 -lxml2 -lz -lpthread -lm
-L/share/apps/intel/cce/9.1.042/lib -L/share/ap
ps/fftw/intel/fftw-2.1.5-s64/lib -L/usr/X11R6/lib" -L/usr/X11R6/lib
-L/share/apps/intel/fce/9.1.036/lib<o:p></o:p></p>
<p class=MsoPlainText>-L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/ -L/u<o:p></o:p></p>
<p class=MsoPlainText>sr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64
-lsvml -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -ldl<o:p></o:p></p>
<p class=MsoPlainText>/bin/sh: -c: line 0: unexpected EOF while looking for
matching `"'<o:p></o:p></p>
<p class=MsoPlainText>/bin/sh: -c: line 1: syntax error: unexpected end of file<o:p></o:p></p>
<p class=MsoPlainText>make[3]: *** [libgmx.la] Error 2<o:p></o:p></p>
<p class=MsoPlainText>make[3]: Leaving directory<o:p></o:p></p>
<p class=MsoPlainText>`/home/makeuser/tmp/gromacs/gromacs-3.2.1_s64/gromacs-3.2.1/src/gmxlib'<o:p></o:p></p>
<p class=MsoPlainText>make[2]: *** [all-recursive] Error 1<o:p></o:p></p>
<p class=MsoPlainText>make[2]: Leaving directory<o:p></o:p></p>
<p class=MsoPlainText>`/home/makeuser/tmp/gromacs/gromacs-3.2.1_s64/gromacs-3.2.1/src'<o:p></o:p></p>
<p class=MsoPlainText>make[1]: *** [all] Error 2<o:p></o:p></p>
<p class=MsoPlainText>make[1]: Leaving directory<o:p></o:p></p>
<p class=MsoPlainText>`/home/makeuser/tmp/gromacs/gromacs-3.2.1_s64/gromacs-3.2.1/src'<o:p></o:p></p>
<p class=MsoPlainText>make: *** [all-recursive] Error 1<o:p></o:p></p>
<p class=MsoPlainText>Making install in src<o:p></o:p></p>
<p class=MsoPlainText>make[1]: Entering directory<o:p></o:p></p>
<p class=MsoPlainText>`/home/makeuser/tmp/gromacs/gromacs-3.2.1_s64/gromacs-3.2.1/src'<o:p></o:p></p>
<p class=MsoPlainText>Making install in gmxlib<o:p></o:p></p>
<p class=MsoPlainText>make[2]: Entering directory<o:p></o:p></p>
<p class=MsoPlainText>`/home/makeuser/tmp/gromacs/gromacs-3.2.1_s64/gromacs-3.2.1/src/gmxlib'<o:p></o:p></p>
<p class=MsoPlainText>/bin/sh ../../libtool --mode=link icc -O3
-I/usr/include/libxml2 -L/share/apps/intel/cce/9.1.042/lib<o:p></o:p></p>
<p class=MsoPlainText>-L/share/apps/fftw/intel/fftw-2.1.5-s64/lib
-L/ usr/X11R6/lib -o<o:p></o:p></p>
<p class=MsoPlainText>libgmx.la -rpath<o:p></o:p></p>
<p class=MsoPlainText>/share/apps/gromacs/intel/gromacs-3.2.1-s64/x86_64-unknown-linux-gnu/lib<o:p></o:p></p>
<p class=MsoPlainText>-version-info 3:0:0 3dview.lo
atomprop.lo block_tx.lo bondfree.lo<o:p></o:p></p>
<p class=MsoPlainText>calcgrid.lo calch.lo confio.lo copyrite.lo disre.lo
do_fit.lo enxio.lo<o:p></o:p></p>
<p class=MsoPlainText>ewald_util.lo fatal.lo ffscanf.lo filenm.lo futil.lo
gb util.lo<o:p></o:p></p>
<p class=MsoPlainText>fnbf.lo gmxfio.lo ifunc.lo index.lo cinvsqrtdata.lo
invblock.lo macros.lo orires.lo main.lo maths.lo matio.lo mshift.lo mvdata.lo<o:p></o:p></p>
<p class=MsoPlainText>mvxvf.lo nam es.lo
network.lo nrama.lo nrjac.lo nrnb.lo pargs.lo<o:p></o:p></p>
<p class=MsoPlainText>pbc.lo pdbio.lo princ.lo rando.lo random.lo gmx_random.lo
rbin.lo<o:p></o:p></p>
<p class=MsoPlainText>readinp.lo replace.lo rmpbc.lo
s hift_util.lo sortwater.lo<o:p></o:p></p>
<p class=MsoPlainText>smalloc.lo stat.lo statutil.lo strdb.lo string2.lo
symtab.lo tpxio.lo<o:p></o:p></p>
<p class=MsoPlainText>trnio.lo trxio.lo txtdump.lo typedefs.lo viewit.lo
wgm s.lo<o:p></o:p></p>
<p class=MsoPlainText>wman.lo writeps.lo xdrd.lo xtcio.lo xvgr.lo detectcpu.lo
libxdrf.lo vec.lo dihres.lo xmlio.lo innerf.lo f77_wrappers.lo mgmx.lo
widget.lo<o:p></o:p></p>
<p class=MsoPlainText>-L/usr/ X11R6/lib64
-lnsl -lsrfftw -lsfftw -lXm -lXt -lSM -lICE<o:p></o:p></p>
<p class=MsoPlainText>-lXext -lXp -lX11 -lxml2 -lz -lpthread -lm -L/share/apps/intel/cce/9.1.042/lib
-L/share/ap ps/fftw/intel/fftw-2.1.5-s64/lib -L/usr/X11R6/lib"
-L/usr/X11R6/lib -L/share/apps/intel/fce/9.1.036/lib<o:p></o:p></p>
<p class=MsoPlainText>-L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/ -L/u<o:p></o:p></p>
<p class=MsoPlainText>sr/lib/gcc/x86_64-redhat-linux/3.4.6/../../../../lib64
-lsvml -lifport -lifcore -limf -lm -lipgo -lirc -lgcc_s -lirc_s -ldl<o:p></o:p></p>
<p class=MsoPlainText>/bin/sh: -c: line 0: unexpected EOF while looking for
matching `"'<o:p></o:p></p>
<p class=MsoPlainText>/bin/sh: -c: line 1: syntax error: unexpected end of file<o:p></o:p></p>
<p class=MsoPlainText>make[2]: *** [libgmx.la] Error 2<o:p></o:p></p>
<p class=MsoPlainText>make[2]: Leaving directory<o:p></o:p></p>
<p class=MsoPlainText>`/home/makeuser/tmp/gromacs/gromacs-3.2.1_s64/gromacs-3.2.1/src/gmxlib'<o:p></o:p></p>
<p class=MsoPlainText>make[1]: *** [install-recursive] Error 1<o:p></o:p></p>
<p class=MsoPlainText>make[1]: Leaving directory<o:p></o:p></p>
<p class=MsoPlainText>`/home/makeuser/tmp/gromacs/gromacs-3.2.1_s64/gromacs-3.2.1/src'<o:p></o:p></p>
<p class=MsoNormal>make: *** [install-recursive] Error 1<o:p></o:p></p>
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