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<DIV>Dear gmx users,</DIV>
<DIV> </DIV>
<DIV>I have a question about g_mdmat, related to a question I posed
earlier. I know a bit more now. When I run the command on a
trajectory in pdb format, either using -b and -e to specify which string of
frames to average over, or just leaving -b, -e unspecified, I get a contact
map that is not an average but is identical to the contact map of the
structure in the last frame that is read. It does not matter whether
I specify -mean or leave it out and run default. I have verified that
averaging is not happening by using the -frames option and comparing the
maps of the individual structures to my attempted average maps. I need
some help/suggestions of what I might be doing wrong.</DIV>
<DIV> </DIV>
<DIV>Thanks for any help you can give,</DIV>
<DIV> </DIV>
<DIV>David Lowry </DIV></BODY></HTML>