Thank you for your kind reply, Stephane. <br>Anyhow it is a little disappointing that Generalized-Born is not implemented in Gromacs. <br><br>Sincerely, <br>Seungpyo Hong <br><br><div><span class="gmail_quote">On 7/16/07,
<b class="gmail_sendername">Stéphane Téletchéa</b> <<a href="mailto:steletch@jouy.inra.fr">steletch@jouy.inra.fr</a>> wrote:</span><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
SeungPyo Hong a écrit :<br>> Dear gmx-users,<br>><br>> Recently I want to perform MD for protein with implicit solvent model.<br>> Gromacs does not seem to support it.<br>> Could you let me know where to find information about implicit solvent
<br>> simulation with Gromacs?<br>> Also I will be glad if you tell me your opinion about the implicit<br>> solvent simulation to protein.<br>><br>> Thank you.<br>><br><br>There is no Generalised-Born approach implemented (at least available)
<br>but you may consider reaction field. See chapter 7, paragraph<br>"Electrostatics and VdW".<br><br>Cheers,<br>Stéphane<br><br>--<br>Stéphane Téletchéa, PhD. <a href="http://www.steletch.org">
http://www.steletch.org</a><br>Unité Mathématique Informatique et Génome <a href="http://migale.jouy.inra.fr/mig">http://migale.jouy.inra.fr/mig</a><br>INRA, Domaine de Vilvert Tél : (33) 134 652 891<br>78352 Jouy-en-Josas cedex, France Fax : (33) 134 652 901
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