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<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>I have already asked about this but I think maybe I did not
give enough information so I made the following page:<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><a href="http://cs86.com/CNSE/SWNT.htm">http://cs86.com/CNSE/SWNT.htm</a><o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>It outlines every step I have taken and where I am stuck is
at the end with grompp when it spits out the following error:<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>********************************************************************************************************<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'>Fatal error:<u1:p></u1:p></span></font><font size=2 face=Arial><span
style='font-size:10.0pt;font-family:Arial'><o:p></o:p></span></font></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><font
size=3 face="Times New Roman"><span style='font-size:12.0pt'>number of
coordinates in coordinate file (SWNT_6_6_144_b4em.gro, 699)<u1:p></u1:p></span><o:p></o:p></font></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><font
size=3 face="Times New Roman"><span style='font-size:12.0pt'>
does not match topology (SWNT_6_6_144.top, 0)<u1:p></u1:p></span><o:p></o:p></font></p>
<p class=MsoNormal style='mso-margin-top-alt:auto;mso-margin-bottom-alt:auto'><font
size=3 face="Times New Roman"><span style='font-size:12.0pt'><u1:p> </u1:p>also
it updates the SWNT_6_6_144.top file to: <a
href="http://cs86.com/CNSE/files/SWNT_6_6_144_post_grommp.top"><font
color=black><span style='color:windowtext'>SWNT_6_6_144.top</span></font></a><br>
</span></font><font size=2 face=Arial><span style='font-size:10.0pt;font-family:
Arial'>********************************************************************************************************</span></font><br>
<font size=2 face=Arial><span style='font-size:10.0pt;font-family:Arial'>I have
looked through both the *.gro and *.top files and I can not find anything wrong
with them; maybe one of you will have better luck.</span></font><o:p></o:p></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Any help or advice is greatly appreciated!<o:p></o:p></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
<pre><font size=2 face="Courier New"><span style='font-size:10.0pt'>~Christopher Stiles <o:p></o:p></span></font></pre><pre><st1:place
w:st="on"><st1:PlaceType w:st="on"><font size=2 face="Courier New"><span
style='font-size:10.0pt'>College</span></font></st1:PlaceType> of <st1:PlaceName
w:st="on">Nanoscale</st1:PlaceName></st1:place> Science and Engineering (CNSE)<o:p></o:p></pre><pre><font
size=2 face="Courier New"><span style='font-size:10.0pt'>State <st1:PlaceType
w:st="on">University</st1:PlaceType> of <st1:PlaceName w:st="on">New York</st1:PlaceName>, <st1:place
w:st="on"><st1:City w:st="on">Albany</st1:City>, <st1:State w:st="on">New York</st1:State> <st1:PostalCode
w:st="on">12203</st1:PostalCode>, <st1:country-region w:st="on">USA</st1:country-region></st1:place><o:p></o:p></span></font></pre>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><o:p> </o:p></span></font></p>
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