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<DIV><FONT face=Arial size=2><SPAN class=815142411-21082007>I calculated SASA
using g_sas for three proteins with -r and -oa and found that the atom area for
one protein is considerably larger than two others. I dont know it is due to the
nature of different proteins or something incorrect for the command g_sas
itself. And I checked the mailing list and found that Berk once said in
2003</SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN
class=815142411-21082007></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=815142411-21082007>"<FONT size=3>The -r
and -oa (resarea and atomarea) output of g_sas has always been
incorrect."</FONT></SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN class=815142411-21082007><FONT
size=3></FONT></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=815142411-21082007><FONT size=3><FONT
size=2>I want to ask if g_sas for the gmx3.3.1 can give correct resarea and
atomarea. </FONT></FONT></SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN class=815142411-21082007><FONT size=3><FONT
size=2></FONT></FONT></SPAN></FONT> </DIV>
<DIV><FONT face=Arial size=2><SPAN class=815142411-21082007><FONT size=3><FONT
size=2>Thanks in advance,</FONT></FONT></SPAN></FONT></DIV>
<DIV><FONT face=Arial size=2><SPAN
class=815142411-21082007></SPAN></FONT> </DIV>
<DIV align=left>
<DIV align=left><FONT size=4>Zhongqiao Hu</FONT></DIV>
<DIV align=left> </DIV>
<DIV align=left>
<DIV align=left>
<DIV align=left></DIV></DIV><SPAN class=815142411-21082007>D</SPAN>epartment of
Chemical and Biomolecular Engineering</DIV>
<DIV align=left>National University of Singapore</DIV>
<DIV align=left><FONT face=Arial size=2></FONT> </DIV>
<DIV align=left> </DIV></DIV>
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