<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<meta content="text/html;charset=ISO-8859-1" http-equiv="Content-Type">
</head>
<body bgcolor="#ffffff" text="#000000">
Hi,<br>
<br>
For ED analysis you don't need to run make_edi. Check g_covar and later
g_anaeig.<br>
<br>
Ran.<br>
<br>
Anirban Ghosh wrote:
<blockquote cite="mid14908.17195.qm@web8514.mail.in.yahoo.com"
type="cite">Hi All,<br>
I want to do ED analysis along first principle component in GROMACS. I
am trying to make the .edi file through make_edi command. But cannot
understand which option to pick among -linfix. -linacc, -radfix,
-radacc, -radcon. I also cannot understand how to specify the
option(string) for this in the make_edi command. Please tell me how to
execute this command. Any suggestion is welcome.<br>
<br>
Regards,<br>
<br>
<br>
<div> </div>
<div><font color="#0000bf"><strong>Anirban Ghosh</strong></font></div>
<div><font color="#0000bf"><strong>M.Tech Bioinformatics</strong></font></div>
<div><font color="#0000bf"><strong>University of Hyderabad</strong></font></div>
<div><font color="#0000bf"><strong>Hyderabad - 500 046</strong></font></div>
<div><font color="#0000bf"><strong>Andhra Pradesh</strong></font></div>
<div><font color="#0000bf"><strong>India</strong></font></div>
<p><!--10--> </p>
<hr size="1"> Try the revolutionary next-gen Yahoo! Mail. <a
href="http://in.rd.yahoo.com/tagline_mail_10/*http://mrd.mail.yahoo.com/dc/landing">Click
here.</a>
<pre wrap="">
<hr size="4" width="90%">
_______________________________________________
gmx-users mailing list <a class="moz-txt-link-abbreviated" href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a>
<a class="moz-txt-link-freetext" href="http://www.gromacs.org/mailman/listinfo/gmx-users">http://www.gromacs.org/mailman/listinfo/gmx-users</a>
Please search the archive at <a class="moz-txt-link-freetext" href="http://www.gromacs.org/search">http://www.gromacs.org/search</a> before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to <a class="moz-txt-link-abbreviated" href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.
Can't post? Read <a class="moz-txt-link-freetext" href="http://www.gromacs.org/mailing_lists/users.php">http://www.gromacs.org/mailing_lists/users.php</a></pre>
</blockquote>
<br>
<br>
<pre class="moz-signature" cols="72">--
------------------------------------------------------
Ran Friedman
Postdoctoral Fellow
Computational Structural Biology Group (A. Caflisch)
Department of Biochemistry
University of Zurich
Winterthurerstrasse 190
CH-8057 Zurich, Switzerland
Tel. +41-44-6355593
Email: <a class="moz-txt-link-abbreviated" href="mailto:r.friedman@bioc.unizh.ch">r.friedman@bioc.unizh.ch</a>
Skype: ran.friedman
------------------------------------------------------
</pre>
</body>
</html>