Hello all,<br><br> I'm trying to handle covariance data using the ascii output from g_covar. I let g_covar calculate a covariance matrix for 198 alpha carbons of a protein, which should give me a 594 x 594 matrix. This is probably a simple issue, but I'm confused by the ordering of the elements in the ascii file. It contains a matrix arranged as 117612 x 3. So, how does this translate into a 594 x 594 matrix? Also, I know there's an option in g_covar to output an xpm file that averages values to create a matrix where each row and column correspond to one atom, but I'm unclear how this is done. I would like to do this using the data from the ascii file. If anyone could explain this to me, or tell me were to look, I would really appreciate it.
<br><br>Thanks in advance,<br>Russell Green<br>