<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><div><div style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; min-height: 14px; ">Hi all,</div></div><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><br class="webkit-block-placeholder"></div><div>I am trying to install Gromacs 3.3.2 on the new Leopard Mac OSX. the OSX was installed anew, and not from an upgrade. Developer tools were installed too.</div><div><br class="webkit-block-placeholder"></div><div>I have already compiled and installed lam-7.0.6 and fftw-3.0.1 (single and double precision) without a problem.</div><div>The configure parameters were:</div><div> </div><div>for lam: ./configure --with-fc=/usr/local/bin/gfortran</div><div>for fftw (single): ./configure --enable-float --enable-threads --enable-sse</div><div>for fftw (double): ./configure --enable-threads --enable-sse2</div><div><br class="webkit-block-placeholder"></div><div><br class="webkit-block-placeholder"></div><div>For gromacs, the configuration is: ./configure --enable-mpi</div><div>when I type make, compilation begins and end with the following lines: </div><div><br class="webkit-block-placeholder"></div><div><div><font class="Apple-style-span" face="Courier">mpicc -I/sw/include -framework Accelerate -o grompp topio.o toppush.o topcat.o topshake.o convparm.o tomorse.o sorting.o splitter.o vsite_parm.o readir.o add_par.o topexcl.o toputil.o topdirs.o grompp.o compute_io.o -L/usr/local/lib ../mdlib/.libs/libmd_mpi.a -L/usr/X11/lib -L/sw/lib ../gmxlib/.libs/libgmx_mpi.a /usr/local/lib/libfftw3f.a -lm /usr/X11/lib/libSM.6.0.0.dylib /usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib /usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib</font></div><div><font class="Apple-style-span" face="Courier">ld: in ../gmxlib/.libs/libgmx_mpi.a(nb_kernel204_ia32_sse.o), in section __TEXT,__text reloc 1: bad pc-rel vanilla relocation length</font></div><div><font class="Apple-style-span" face="Courier"><br class="webkit-block-placeholder"></font></div><div><font class="Apple-style-span" face="Courier">collect2: ld returned 1 exit status</font></div><div><font class="Apple-style-span" face="Courier">make[3]: *** [grompp] Error 1</font></div><div><font class="Apple-style-span" face="Courier">make[2]: *** [all-recursive] Error 1</font></div><div><font class="Apple-style-span" face="Courier">make[1]: *** [all] Error 2</font></div><div><font class="Apple-style-span" face="Courier">make: *** [all-recursive] Error 1</font></div><div><br class="webkit-block-placeholder"></div><div>attached below is configure output for Gromacs. </div></div><div><br class="webkit-block-placeholder"></div><div>Has anyone else encountered this problem or has any idea how to deal with it ?</div><div><br class="webkit-block-placeholder"></div><div>Thanks in advance,</div><div><br class="webkit-block-placeholder"></div><div>Hadas Leonov. </div><div><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div><a href="mailto:hleonov@cc.huji.ac.il">hleonov@cc.huji.ac.il</a></div></div></div></div></div></div><div apple-content-edited="true"><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><div>Department of Biological Chemistry</div><div>Alexander Silberman institute of Life Sciences</div><div>The Hebrew University, </div><div>Jerusalem, Israel</div></div></span> </div></body></html>