Dear users,<br><br>I'm running NPT simulation POPC with a short peptide.<br>I see the long bonds across the unit cell in VMD.<br>Why am I getting broken lipid molecules in the trajectory (original .xtc file w/o any post-modification)?
<br><br>Some lipids move whole molecules, but some are broken.<br>How can I control the unit of image?<br>I couldn't find any related word in the manual.<br><br>I assume image will be done by "residue".<br>Then I shouldn't get this strange result.
<br><br>I got the popc.itp from Dr. Tieleman's web site.<br>Any idea?<br><br clear="all"><br>-- <br>Best wishes,<br><br>MYUNGGI YI<br>==================================<br>KLB 419<br>Institute of Molecular Biophysics<br>
Florida State University<br>Tallahassee, FL 32306<br><br>Office: (850) 645-1334<br><a href="http://www.scs.fsu.edu/~myunggi">http://www.scs.fsu.edu/~myunggi</a>