Thank you.<br><br>I've already read the part, but I was wondering how can I supply my reference z positon in the .itp file.<br><br>I can prepare the "restraint.gro" file manually by placing the atoms at z=1.0
nm.<br>Then I think I can supply with -r option.<br><br>Have a great day.<br><br><br><div class="gmail_quote">On Jan 16, 2008 3:44 PM, Mark Abraham <<a href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>
> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div class="Ih2E3d">Myunggi Yi wrote:<br>> Thank you.<br>><br>> I'm a beginner.
<br>> How can I setup the restrain?<br>> Where should I get the information.<br>> The manual is not enough for me.<br><br></div>There's even an example of planar restraints in chapter 5.<br><div class="Ih2E3d">
<br>> The position restraint .itp file dosen't seem to offer for the reference<br>> (z= 1.0) option.<br>> Whould give me more detail?<br><br></div>You're not constraining to a plane, you're restraining the coordinates
<br>to be near the plane it starts on (but for advanced usage read about<br>grompp -r). For now, see the links on the URL that Anirban provided.<br><font color="#888888"><br>Mark<br></font><div><div></div><div class="Wj3C7c">
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</a><br></div></div></blockquote></div><br><br clear="all"><br>-- <br>Best wishes,<br><br>MYUNGGI YI<br>==================================<br>KLB 419<br>Institute of Molecular Biophysics<br>Florida State University<br>Tallahassee, FL 32306
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