Dear Gromacs Users,<br><br>After a long time I am working with gromacs. Though at the starting I got some problem in installation with the rpm, (a conflict error with mono-web) I installed it anyway forcefully. Problem is the trajectory files that I am getting are too big. I have run a mdrun for 2ns on a protein+water system consisting of 60149
atoms in 18875 residues (as after running 'genbox' using spc216.gro).
The .xtc, and .trr files I am getting are of 19GB and 12GB
respectively. Is this normal, or I have some problem with my gromacs?
My hard disk space is 80GB. I am just worrying about what should I do
if I will have to run it for 4ns or more than that?? If these files are so big how many MD
will I be able to run? Is double precision installation of gromacs
helpful? will I get these trajectory files in some compressed format??<br clear="all"><br>Please help.<br> <br>Nabajyoti Goswami<br><br><br><br><br><br><br><br><br><br><br><br><br>Ph.D Student.<br>Center for Biotechnology,
<br>Anna University,<br>Chennai-600025<br>Tamil Nadu.<br>Mobile: 09840487093