Thank a lot. I am getting the clue for it.<br>Thank all of you.<br><br><div class="gmail_quote">On Jan 23, 2008 4:50 AM, Mark Abraham <<a href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>> wrote:<br><blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
<div class="Ih2E3d">Nabajyoti Goswami wrote:<br>> Dear Gromacs Users,<br>><br>> After a long time I am working with gromacs. Though at the starting I<br>> got some problem in installation with the rpm, (a conflict error with
<br>> mono-web) I installed it anyway forcefully. Problem is the trajectory<br>> files that I am getting are too big. I have run a mdrun for 2ns on a<br>> protein+water system consisting of 60149 atoms in 18875 residues (as
<br>> after running 'genbox' using spc216.gro). The .xtc, and .trr files I am<br>> getting are of 19GB and 12GB respectively. Is this normal, or I have<br>> some problem with my gromacs? My hard disk space is 80GB. I am just
<br>> worrying about what should I do if I will have to run it for 4ns or more<br>> than that?? If these files are so big how many MD will I be able to run?<br>> Is double precision installation of gromacs helpful? will I get these
<br>> trajectory files in some compressed format??<br><br></div><a href="http://wiki.gromacs.org/index.php/Using_Trajectory_Information#Reducing_Trajectory_Storage_Volume" target="_blank">http://wiki.gromacs.org/index.php/Using_Trajectory_Information#Reducing_Trajectory_Storage_Volume
</a><br><font color="#888888"><br>Mark<br></font><div><div></div><div class="Wj3C7c">_______________________________________________<br>gmx-users mailing list <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org
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<br><br><br><br><br><br><br><br><br><br><br><br><br>Ph.D Student.<br>Center for Biotechnology,<br>Anna University,<br>Chennai-600025<br>Tamil Nadu.<br>Mobile: 09840487093