<html>
<head>
<style>
.hmmessage P
{
margin:0px;
padding:0px
}
body.hmmessage
{
FONT-SIZE: 10pt;
FONT-FAMILY:Tahoma
}
</style>
</head>
<body class='hmmessage'>
Thanks, but I did get some papers on the analysis done on POPC by MD but I did not get any experimental papers showing the values so that I can compare results of my MD with experimental data.<BR>
If anyone happens to have such papers please send them to me at <A href="mailto:pragyachohan@hotmail.com">pragyachohan@hotmail.com</A>.<BR>> Date: Sat, 2 Feb 2008 07:20:54 -0500<BR>> From: jalemkul@vt.edu<BR>> To: gmx-users@gromacs.org<BR>> Subject: Re: [gmx-users] analysis of POPC<BR>> <BR>> Quoting pragya chohan <pragyachohan@hotmail.com>:<BR>> <BR>> ><BR>> > hello users<BR>> > I am trying to do analysis after bilayer simulation. I cannot get any<BR>> > experimental data on POPC to validate my model with. Can the people who are<BR>> > working on same lipid tell me some references and also what analysis should<BR>> > be done of the bilayer before putting protein into it?<BR>> <BR>> I spent less than two minutes on Google and found papers giving all sorts of<BR>> experimental parameters (density, area per headgroup, bilayer thickness, etc). <BR>> I suggest you try the same.<BR>> <BR>> In terms of the analysis you need to do, that is up to what question you are<BR>> asking and why you are simulating this particular lipid. Refer to the<BR>> literature and find papers by groups that have simulated proteins in POPC (and<BR>> perhaps proteins in membranes in general) to determine what they have found<BR>> relevant, and apply the same to your system.<BR>> <BR>> -Justin<BR>> <BR>> > _________________________________________________________________<BR>> > Tried the new MSN Messenger? It’s cool! Download now.<BR>> > http://messenger.msn.com/Download/Default.aspx?mkt=en-in<BR>> <BR>> <BR>> <BR>> ========================================<BR>> <BR>> Justin A. Lemkul<BR>> Graduate Research Assistant<BR>> Department of Biochemistry<BR>> Virginia Tech<BR>> Blacksburg, VA<BR>> jalemkul@vt.edu | (540) 231-9080<BR>> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/<BR>> <BR>> ========================================<BR>> _______________________________________________<BR>> gmx-users mailing list gmx-users@gromacs.org<BR>> http://www.gromacs.org/mailman/listinfo/gmx-users<BR>> Please search the archive at http://www.gromacs.org/search before posting!<BR>> Please don't post (un)subscribe requests to the list. Use the <BR>> www interface or send it to gmx-users-request@gromacs.org.<BR>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php<BR><BR><br /><hr />Detailed profiles 4 marriage! Only at Shaadi.com <a href='http://ss1.richmedia.in/recurl.asp?pid=107' target='_new'>Try it!</a></body>
</html>