<html><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; ">Hi Gromacs Users<div><br class="webkit-block-placeholder"></div><div>I've looked at trying to build Gromacs 3.3.2 with the pretty much the same configuration and suggestions as below, but I am still running into the ld error:<div><br class="webkit-block-placeholder"></div><div><div>ld: in ../gmxlib/.libs/libgmx.a(nb_kernel300_ia32_3dnow.o), in section __TEXT,__text reloc 1: bad pc-rel vanilla relocation length</div><div><br class="webkit-block-placeholder"></div><div apple-content-edited="true"> <span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; "><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space; "><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0px; "><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; font: normal normal normal 12px/normal Helvetica; min-height: 14px; ">Any other suggestions?<br class="Apple-interchange-newline"><br></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" style="font: normal normal normal 12px/normal Helvetica; ">Warner Yuen</font></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" style="font: normal normal normal 12px/normal Helvetica; ">Scientific&nbsp;Computing&nbsp;</font></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" style="font: normal normal normal 12px/normal Helvetica; ">Consulting Engineer</font></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" style="font: normal normal normal 12px/normal Helvetica; ">Apple Computer</font></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" style="font: normal normal normal 12px/normal Helvetica; ">email: <a href="mailto:wyuen@apple.com">wyuen@apple.com</a></font></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" style="font: normal normal normal 12px/normal Helvetica; ">Tel: 408.718.2859</font></p><p style="margin-top: 0px; margin-right: 0px; margin-bottom: 0px; margin-left: 0px; "><font face="Helvetica" size="3" style="font: normal normal normal 12px/normal Helvetica; ">Fax: 408.715.0133</font></p><br class="Apple-interchange-newline"></span><br class="Apple-interchange-newline"></div></span> </div><br><div><div>On Jan 24, 2008, at 3:00 AM, <a href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><span class="Apple-style-span" style="border-collapse: separate; color: rgb(0, 0, 0); font-family: Helvetica; font-size: 12px; font-style: normal; font-variant: normal; font-weight: normal; letter-spacing: normal; line-height: normal; orphans: 2; text-align: auto; text-indent: 0px; text-transform: none; white-space: normal; widows: 2; word-spacing: 0px; -webkit-border-horizontal-spacing: 0px; -webkit-border-vertical-spacing: 0px; -webkit-text-decorations-in-effect: none; -webkit-text-size-adjust: auto; -webkit-text-stroke-width: 0; ">------------------------------<br><br>Message: 7<br>Date: Thu, 24 Jan 2008 11:14:56 +0100 (CET)<br>From: Yunan Yan &lt;<a href="mailto:yayan@chemie.fu-berlin.de">yayan@chemie.fu-berlin.de</a>&gt;<br>Subject: [gmx-users] Re: installation problem for MAC OS<br>To:<span class="Apple-converted-space">&nbsp;</span><a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>Message-ID:<br><span class="Apple-tab-span" style="white-space: pre; ">        </span>&lt;<a href="mailto:Pine.LNX.4.44.0801241110280.20884-100000@mail.chemie.fu-berlin.de">Pine.LNX.4.44.0801241110280.20884-100000@mail.chemie.fu-berlin.de</a>&gt;<br>Content-Type: TEXT/PLAIN; charset=US-ASCII<br><br><br>Thank you so much. It works.<br><br>Best,<br>Yun-an<br><br><br><blockquote type="cite"><br></blockquote><blockquote type="cite">Hello!<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">A quick fix so that you will be able to compile, is to try to run the<br></blockquote><blockquote type="cite">configure script with the flag --disable-ia32-sse.<br></blockquote><blockquote type="cite">Hopefully you should get a working installation, but with no sse-<br></blockquote><blockquote type="cite">support (which might be what you want :-)<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">Cheers<br></blockquote><blockquote type="cite">/Per<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite">23 jan 2008 kl. 14.24 skrev Yunan Yan:<br></blockquote><blockquote type="cite"><br></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Dear all,<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">I have difficulties when I try to<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">install Gromacs 3.3.2 in my MAC OS.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Please see the following for details.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">configuration:<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">$ ./configure CC=icc CXX=icc F77=ifort<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">--prefix=/Users/yunan/usr/local/Gromacs &nbsp;--with-qmmm-cpmd --with-<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">fft=fftw3<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">CLAGS=-no-multibyte-chars CPP=/usr/bin/cpp<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">System information:<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">uname -m = i386<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">uname -r = 9.1.0<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">uname -s = Darwin<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">uname -v = Darwin Kernel Version 9.1.0: Wed Oct 31 17:46:22 PDT 2007;<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">root:xnu-1228.0.2~1/RELEASE_I386<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">/usr/bin/hostinfo &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;= Mach kernel version:<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">&nbsp;&nbsp;&nbsp;Darwin Kernel Version 9.1.0: Wed Oct 31 17:46:22 PDT 2007;<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">root:xnu-1228.0.2~1/RELEASE_I386<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Kernel configured for up to 8 processors.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">8 processors are physically available.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">8 processors are logically available.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Processor type: i486 (Intel 80486)<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">configure:3291: icc -V<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Intel(R) C Compiler for applications running on IA-32, Version 10.1<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Build 20070913 Package ID: m_cc_p_10.1.006<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Copyright (C) 1985-2007 Intel Corporation. &nbsp;All rights reserved.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Error:<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">icc -funroll-all-loops -I/Users/yunan/usr/local/lib -framework<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Accelerate<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">-o grompp topio.o toppush.o topcat.o topshake.o convparm.o tomorse.o<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">sorting.o splitter.o vsite_parm.o readir.o add_par.o topexcl.o<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">toputil.o<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">topdirs.o grompp.o compute_io.o &nbsp;../mdlib/.libs/libmd.a -L/usr/X11/lib<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">../gmxlib/.libs/libgmx.a -lfftw3f /usr/X11/lib/libSM.6.0.0.dylib<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">/usr/X11/lib/libICE.6.3.0.dylib /usr/X11/lib/libX11.6.2.0.dylib<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">/usr/X11/lib/libXau.6.0.0.dylib /usr/X11/lib/libXdmcp.6.0.0.dylib<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">ld: in ../gmxlib/.libs/libgmx.a(nb_kernel204_ia32_sse.o), in section<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">__TEXT,__text reloc 1: bad pc-rel vanilla relocation length<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">The same will happen when I use gcc compiler.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Does someone have some ideas about what's going on<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">here and how to figure it out?<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Thanks a lot.<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Best regards,<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite">Yun-an<br></blockquote></blockquote><blockquote type="cite"><blockquote type="cite"><br></blockquote></blockquote></span><br class="Apple-interchange-newline"></blockquote></div><br></div></div></body></html>