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<body class='hmmessage'><div style="text-align: left;">Hi,<br><br>Which values are fluctuating?<br>If something is fluctuating, you can see it is running, or not?<br><br>Did you use the -v option of mdrun?<br>This prints the force and energy for every accepted step to stderr.<br><br>Berk.<br><br></div><br><br><blockquote><hr id="EC_stopSpelling">Date: Thu, 6 Mar 2008 05:09:06 +0000<br>From: shahbiochemist@yahoo.com<br>To: gmx-users@gromacs.org<br>Subject: [gmx-users] Checking the Progress of Energy minimization<br><br>Dear All,<br>I am doing Energy minimization of a protein.The valus are fluctuating butI don't know in how much time it will be completed and what are the signs that show that it is running?<br><br><span style="font-weight: bold;">top - 09:54:08 up 22:52, 2 users, load average: 0.07, 0.17, 0.16</span><br style="font-weight: bold;"><span style="font-weight: bold;">Tasks: 111 total, 1 running, 109 sleeping, 1 stopped, 0 zombie</span><br style="font-weight: bold;"><span style="font-weight: bold;">Cpu(s): 6.7%us, 2.3%sy, 0.0%ni, 89.6%id, 0.6%wa, 0.8%hi, 0.0%si, 0.0%st</span><br style="font-weight: bold;"><span style="font-weight: bold;">Mem: 1025804k total, 980436k used, 45368k free, 201956k buffers</span><br style="font-weight: bold;"><span style="font-weight: bold;">Swap: 2104444k total,
0k used, 2104444k free, 454128k cached</span><br style="font-weight: bold;"><br style="font-weight: bold;"><br>Please guide me.<br>Regrads,<br>Lalbadshah<br><br><br><strong><font color="#007f40">SYED LAL BADSHAH <br>M.Phil Scholar <br>NCE in Physical Chemistry, <br>University of Peshawar. <br>NWFP,Pakistan. <br>Cell # 03349060632.</font></strong> Send instant messages to your online friends http://uk.messenger.yahoo.com <BR></blockquote><br /><hr />Express yourself instantly with MSN Messenger! <a href='http://clk.atdmt.com/AVE/go/onm00200471ave/direct/01/' target='_new'>MSN Messenger</a></body>
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