thanks for the help... <br>sorry I made a mistake with flags -f -e in the mail<br><br>Swapna<br><br><div class="gmail_quote">On Tue, Mar 18, 2008 at 4:43 PM, Mark Abraham <<a href="mailto:Mark.Abraham@anu.edu.au">Mark.Abraham@anu.edu.au</a>> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div class="Ih2E3d">SWAPNA wrote:<br>
> Dear gmx users,<br>
> I am using g_anaeig to filter my traj along the first eigenvector.<br>
><br>
> 'g_anaeig -b 5000 -f 15000 -v eigenvec.trr -f calpha.tpr -s calpha.xtc<br>
> -first 1 -last 1 -filt alongeigvec1 -dt 100'<br>
> 5000ps to 15000ps has equilibriated trajectory. So I am using that to<br>
> perform essential dynamics.<br>
><br>
> When I do this it gives segmentation fault as below<br>
> ------------<br>
> Reading frame 0 time 0.000 Segmentation fault<br>
> -----------------<br>
<br>
</div>The -f flag doesn't accept a number.<br>
<div class="Ih2E3d"><br>
> When I give -b 0 -e 15000 it works without any problem.<br>
> But it stops reading frames before the end time is 15000.<br>
><br>
> -----------<br>
> Reading frame 29000 time 14500.001<br>
> ----------<br>
><br>
> can I get filtered trajectory for -b 5000 -f 15000 ?<br>
<br>
</div>No, but you might be able to get one for -b 5000 -e 15000.<br>
<br>
Use gmxcheck on the trajectory to see what it contains.<br>
<font color="#888888"><br>
Mark<br>
</font><div><div></div><div class="Wj3C7c">_______________________________________________<br>
gmx-users mailing list <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>
<a href="http://www.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://www.gromacs.org/mailman/listinfo/gmx-users</a><br>
Please search the archive at <a href="http://www.gromacs.org/search" target="_blank">http://www.gromacs.org/search</a> before posting!<br>
Please don't post (un)subscribe requests to the list. Use the<br>
www interface or send it to <a href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br>
Can't post? Read <a href="http://www.gromacs.org/mailing_lists/users.php" target="_blank">http://www.gromacs.org/mailing_lists/users.php</a><br>
</div></div></blockquote></div><br><br clear="all"><br>-- <br>The logic of life lies exclusively neither in the most incredible detail, nor in the most sweeping synopsis.