Dear gmx users,<br>I am using g_anaeig to filter my traj along the first eigenvector.<br><br>'g_anaeig -b 5000 -f 15000 -v eigenvec.trr -f calpha.tpr -s calpha.xtc -first 1 -last 1 -filt alongeigvec1 -dt 100'<br>5000ps to 15000ps has equilibriated trajectory. So I am using that to perform essential dynamics.<br>
<br>When I do this it gives segmentation fault as below<br>------------<br>Reading frame 0 time 0.000 Segmentation fault<br>-----------------<br><br>When I give -b 0 -e 15000 it works without any problem.<br>But it stops reading frames before the end time is 15000.<br>
<br>-----------<br>Reading frame 29000 time 14500.001 <br>----------<br><br>can I get filtered trajectory for -b 5000 -f 15000 ?<br><br><br>Thanks!!<br>Swapna<br><br><br><div class="gmail_quote">On Tue, Mar 18, 2008 at 9:16 AM, Maik Goette <<a href="mailto:mgoette@mpi-bpc.mpg.de">mgoette@mpi-bpc.mpg.de</a>> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Thank you Sir<br>
<br>
If this was fake or not...Me and my dear colleagues had a good laugh,<br>
anyway...also about the nice comments.<br>
<br>
Maybe this inspires: <a href="http://www.youtube.com/watch?v=qiSkyEyBczU" target="_blank">http://www.youtube.com/watch?v=qiSkyEyBczU</a><br>
<br>
"Black hole sun, won't you come...."<br>
<br>
Regards<br>
<br>
Maik Goette, Dipl. Biol.<br>
Max Planck Institute for Biophysical Chemistry<br>
Theoretical & computational biophysics department<br>
Am Fassberg 11<br>
37077 Goettingen<br>
Germany<br>
Tel. : ++49 551 201 2310<br>
Fax : ++49 551 201 2302<br>
Email : mgoette[at]mpi-<a href="http://bpc.mpg.de" target="_blank">bpc.mpg.de</a><br>
mgoette2[at]gwdg.de<br>
WWW : <a href="http://www.mpibpc.gwdg.de/groups/grubmueller/" target="_blank">http://www.mpibpc.gwdg.de/groups/grubmueller/</a><br>
<br>
<br>
roger han wrote:<br>
> Dear mister gromacs<br>
><br>
> My professor interested in black wholes. How can I put a particle in a box and set mass to infinity? Which solvent is best choice and could there be problems with pressure? I'm also not sure about periodic boundaries. Could two black wholes see each other if box too small?<br>
><br>
> Many thanks<br>
><br>
> Ben<br>
> _________________________________________________________________<br>
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</blockquote></div><br><br clear="all"><br>-- <br>The logic of life lies exclusively neither in the most incredible detail, nor in the most sweeping synopsis.