<div>Dear all,</div> <div> </div> <div>I would like to make MD simulations of a drug at the binding site of the receptor sorrounded by DPPC.</div> <div>pdb coordinate file of all DPPC units (189 units, 1 unit has 130 atoms) are described seperately. I was using Dundee PRODRG server for generating .itp and drgpoh2.pdb files for the drug. Since this program is limited to convert files up to 300 atoms, I couldn't use it for the DPPC units for constructing a full drgpoh2.pdb file for the DPPC.</div> <div> </div> <div>Is there any tutorial of GROMACS for this kinds of systems?</div> <div> </div> <div> </div> <div>Kind Regards,</div> <div> </div> <div> </div> <div>Serdar Durdagi</div> <div> </div> <div> </div><p> 
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