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<div>What will happen if pbc=full is used?</div>
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<div class="gmail_quote">2008/4/4 maria goranovic <<a href="mailto:mariagoranovic@gmail.com">mariagoranovic@gmail.com</a>>:<br>
<blockquote class="gmail_quote" style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid">Dear All<br><br>I am running a 128-lipid bilayer simulation with standard parameters. The simulation abruptly crashed after 2 ns, and a look into the pdb files suggested that bonds were being broken and eventually the lipids explode. I tried increasing the cutoffs from 1.0 to 1.4, and this time also, the simulation exploded, but at a different time point.<br>
<br>The energy remains nice and stable till the explosion. <br><br>How does one fix this ? What is planting these bombs ?<br><br>Thank you for suggestions.<br clear="all"><font color="#888888"><br>-- <br>Maria G.<br>Technical University of Denmark<br>
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