Thanks David. There still "inconsitent shifts" warnings with a tpr made by pbc=xyz. By the way, my itp file is not changed, that is, the bonded terms between periodic images are still in the topology. Should I make a topology with pbc=xyz too? <br>
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<blockquote class="gmail_quote" style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid"><br>Bert wrote:<br>> Hi all,<br>><br>> I use pbc=full in my system, and all runs are ok except for the<br>
> "inconsistent shifts" warnings when I use some analysis tools, such as<br>> g_density, g_densmap, etc. I have searched the whole list related to<br>> this problem, and I doubt several analysis tools are not coded with<br>
> consideration of full pbc. Am I right? If so, how to deal with these<br>> warnings? Thanks in advance.<br><br>make a tpr with pbc=xyz for analysis.<br>><br>><br>> ------------------------------------------------------------------------<br>
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