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Dear Muhammad,<br>
<br>
You can plot the rmsf per residue, and calculate the beta factor
yourself B = 8*PI^2*RMSF^2/3. Remember to convert from nm to A if you
want the same values as in the PDB.<br>
<br>
Ran.<br>
<br>
Alif M Latif wrote:
<blockquote cite="mid60073.33349.qm@web53704.mail.re2.yahoo.com"
type="cite">
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<div
style="font-family: times new roman,new york,times,serif; font-size: 12pt;">Dear
GROMACS users and developers,<br>
<br>
I want to plot B-factor of a protein structure against residue. How can
I do that?. Using option -oq in g_rmsf only produce bfac.pdb which is
in .pdb file and assigned at each atom. Is there another way I can get
the plot B-factor vs residue?. Any link to example or tutorial will be
very helpful. <br>
Comments and Suggestions are greatly appreciated. Thank you.<br>
<div> </div>
Muhammad Alif Mohammad Latif<br>
<br>
<div>Department of Chemistry<br>
Faculty of Science<br>
Universiti Putra Malaysia<br>
43400 UPM Serdang, Selangor<br>
MALAYSIA
<div><br>
</div>
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<br>
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<br>
<br>
<pre class="moz-signature" cols="72">--
------------------------------------------------------
Ran Friedman
Postdoctoral Fellow
Computational Structural Biology Group (A. Caflisch)
Department of Biochemistry
University of Zurich
Winterthurerstrasse 190
CH-8057 Zurich, Switzerland
Tel. +41-44-6355593
Email: <a class="moz-txt-link-abbreviated" href="mailto:r.friedman@bioc.unizh.ch">r.friedman@bioc.unizh.ch</a>
Skype: ran.friedman
------------------------------------------------------
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