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Hi <BR>
i found out the residues which form H bond but am still not able to get life time if H bond. The option -lifetime gives t as x and p(t) as y axis. is this value for all the bonds. <BR>
How can i see the lifetime of each bond?<BR>
<BR>
Thanking you<BR>
<BR>
pragya chohan<BR>
<BR>> Date: Sat, 3 May 2008 02:06:52 +0200<BR>> From: dommert@fias.uni-frankfurt.de<BR>> To: gmx-users@gromacs.org<BR>> Subject: Re: [gmx-users] using xmp file<BR>> <BR>> Mark Abraham wrote:<BR>> > pragya chohan wrote:<BR>> >> Dear users<BR>> >> <BR>> >> I wasted to look at H bonding between between a particular residue<BR>> >> and rest of the system. So I did g_hbond. It created a number of<BR>> >> files I want to make a table indicating atom of residue<BR>> >> participating, atom or residue number of Donor atom, lifetime of<BR>> >> those bonds to show their significance.<BR>> >> <BR>> >> Can you tell me which files are useful for this purpose? <BR>> ><BR>> > Yes, but first you should be reading "g_hbond -h" and working some<BR>> > things out for yourself.<BR>> ><BR>> >> Also please tell me how to visualise xmp files on windows><BR>> ><BR>> > Google is probably your friend for finding out about viewers for *xpm*<BR>> > files. The GIMP will certainly work, but it's a heavyweight solution!<BR>> ><BR>> Perhaps the xpm2ps tool will also help to view a ps document, which<BR>> should be possible with windows ;)<BR>> <BR>> <BR>> > Mark<BR>> > _______________________________________________<BR>> > gmx-users mailing list gmx-users@gromacs.org<BR>> > http://www.gromacs.org/mailman/listinfo/gmx-users<BR>> > Please search the archive at http://www.gromacs.org/search before<BR>> > posting!<BR>> > Please don't post (un)subscribe requests to the list. Use the www<BR>> > interface or send it to gmx-users-request@gromacs.org.<BR>> > Can't post? Read http://www.gromacs.org/mailing_lists/users.php<BR>> ><BR>> <BR>> <BR>> -- <BR>> Florian Dommert<BR>> Dipl.-Phys.<BR>> <BR>> Computational and Theoretical Softmatter & Biophysics group<BR>> <BR>> Frankfurt Institute for Advanced Studies<BR>> Johann-Wolfgang-Goethe University<BR>> <BR>> Ruth-Moufang-Str. 1<BR>> 60438 Frankfurt am Main<BR>> <BR>> Phone: +49(0)69 / 798 - 47522<BR>> Fax: +49(0)69 / 798 - 47611<BR>> <BR>> EMail: dommert@fias.uni-frankfurt.de<BR>> Home: http://fias.uni-frankfurt.de/~simbio/Florian_Dommert<BR>> <BR><BR><br /><hr />Skydrive - Get 5GB online space for FREE!. Store and share music, photos and documents online with ease. <a href='http://skydrive.live.com/' target='_new'>Try it now!</a></body>
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