<div>Dear Florian,</div> <div> </div> <div>I want to analyze, trajectory files. So, I need all frames.</div> <div> </div> <div>by the way, in VMD is there any option to use every 10th or 20th frame?</div> <div> </div> <div>Thanks</div> <div> </div> <div>Serdar<BR><BR><B><I>Florian Dommert <dommert@fias.uni-frankfurt.de></I></B> schrieb:</div> <BLOCKQUOTE class=replbq style="PADDING-LEFT: 5px; MARGIN-LEFT: 5px; BORDER-LEFT: #1010ff 2px solid"><BR>serdar durdagi wrote:<BR><BR>> Dear all,<BR>> <BR>> I made a simulation with 2.5 ns (with 12500 frames), when I want to<BR>> open this *.xtc file in VMD, it fails. it can read around 50% of<BR>> frames and than complains low virtual memory (actually I am using a PC<BR>> that has 1GB RAM).<BR>Hello,<BR><BR>if you just want to watch the movie using vmd, don't use every frame,<BR>when opening the xtc-file. Perhaps every 10th or 20th is enough and you<BR>won't get out of
memory.<BR><BR>Best Regards<BR><BR>Flo<BR><BR><BR><BR>> <BR>> Thus, I would like to cut my *.xtc file to small subtrajectory files.<BR>> In gromacs manual, it says it is possible with trjconv option together<BR>> with sub. But it's not clear how can I give a command let's say to<BR>> divide my whole trajectory file to 5 subtrajectories.<BR>> <BR>> Thank you very much in advance for your comments.<BR>> <BR>> <BR>> Serdar<BR>> <BR>> <BR>> <BR>><BR>> ------------------------------------------------------------------------<BR>> Nicht vergessen! Am Sonntag, den 11. Mai ist *Muttertag<BR>> <HTTP: muttertag www.yahoo.de>*<BR>> Geschenkideen, Gedichte & mehr: www.yahoo.de/muttertag<BR>> <HTTP: muttertag www.yahoo.de>.<BR>> ------------------------------------------------------------------------<BR>><BR>> _______________________________________________<BR>> gmx-users mailing list gmx-users@gromacs.org<BR>>
http://www.gromacs.org/mailman/listinfo/gmx-users<BR>> Please search the archive at http://www.gromacs.org/search before posting!<BR>> Please don't post (un)subscribe requests to the list. Use the <BR>> www interface or send it to gmx-users-request@gromacs.org.<BR>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php<BR><BR><BR>-- <BR>Florian Dommert<BR>Dipl.-Phys.<BR><BR>Computational and Theoretical Softmatter & Biophysics group<BR><BR>Frankfurt Institute for Advanced Studies<BR>Johann-Wolfgang-Goethe University<BR><BR>Ruth-Moufang-Str. 1<BR>60438 Frankfurt am Main<BR><BR>Phone: +49(0)69 / 798 - 47522<BR>Fax: +49(0)69 / 798 - 47611<BR><BR>EMail: dommert@fias.uni-frankfurt.de<BR>Home: http://fias.uni-frankfurt.de/~simbio/Florian_Dommert<BR><BR><BR>_______________________________________________<BR>gmx-users mailing list gmx-users@gromacs.org<BR>http://www.gromacs.org/mailman/listinfo/gmx-users<BR>Please search the archive at
http://www.gromacs.org/search before posting!<BR>Please don't post (un)subscribe requests to the list. Use the <BR>www interface or send it to gmx-users-request@gromacs.org.<BR>Can't post? Read http://www.gromacs.org/mailing_lists/users.php</BLOCKQUOTE><BR><p> 
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