Hi all!<br>I am attempting to counter a charge of -13 in a simulation, where the protein is solvated in water. I use the genion option and choose to replace 13 solvent (water) atoms. Upon visualizing the genion output structure, I find that some atoms from three of the eight cys ( a Hydrogen and two sulphur atoms ) have be yanked out of the protein! I wonder why this is happening!! <br>
Is there a way to rectify this?<br>Thanks<br>Jayant James<br clear="all"><br>-- <br>Jayasundar Jayant James<br><br><a href="http://www.chick.com/reading/tracts/0096/0096_01.asp">www.chick.com/reading/tracts/0096/0096_01.asp</a>) <br>