Thank you very much Marcus and Berk, it's running!!!<br><br><div><span class="gmail_quote">2008/6/6, Marcus Kubitzki <<a href="mailto:mkubitz@gwdg.de">mkubitz@gwdg.de</a>>:</span><blockquote class="gmail_quote" style="margin-top: 0; margin-right: 0; margin-bottom: 0; margin-left: 0; margin-left: 0.80ex; border-left-color: #cccccc; border-left-width: 1px; border-left-style: solid; padding-left: 1ex">
Hi Diego,<br><br> during initialization of an REMD run, GMX checks if certain<br> properties are equal among replicas. If not, this incompatibility<br> errors occurs. Check the log files, for there is written what<br> is not identical in one of your replicas. Look for<br>
"XXX is not equal for all subsystems"<br><br> Marcus<br><br><br> Diego Nolasco wrote:<br> > Dear gmx-users,<br> ><br> > I am facing some problems with replica exchange.<br> > Few seconds after the job submission it ends with the error below:<br>
><br> > "<br> > Error on node 0, will try to stop all the nodes<br> > Halting parallel program mdrun on CPU 0 out of 8<br> ><br> > -------------------------------------------------------<br> > Program mdrun, VERSION 3.3.3<br>
> Source code file: main.c, line: 177<br> ><br> > Fatal error:<br> > The 8 subsystems are not compatible<br> > "<br> ><br> > I am using a single topology for all configurations, but it still<br>
> doesn't work.<br> > Does anyone have any tip over this problem?<br> ><br> > Thanks in advance,<br> > Diego.<br> ><br> ><br> ><br><br>> ------------------------------------------------------------------------<br>
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> Can't post? Read <a href="http://www.gromacs.org/mailing_lists/users.php">http://www.gromacs.org/mailing_lists/users.php</a><br><br> --<br> Dr. Marcus Kubitzki<br> Max Planck Institute for Biophysical Chemistry<br>
Computational Biomolecular Dynamics Group<br> Am Fassberg 11<br> D-37077 Göttingen<br> Germany<br> phone: ++49-551-2012312<br> fax: ++49-551-2012302<br> Email: mkubitz[at]<a href="http://gwdg.de">gwdg.de</a><br> www: <a href="http://www.mpibpc.mpg.de/groups/de_groot/">http://www.mpibpc.mpg.de/groups/de_groot/</a><br>
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Please search the archive at <a href="http://www.gromacs.org/search">http://www.gromacs.org/search</a> before posting!<br> Please don't post (un)subscribe requests to the list. Use the<br> www interface or send it to <a href="mailto:gmx-users-request@gromacs.org">gmx-users-request@gromacs.org</a>.<br>
Can't post? Read <a href="http://www.gromacs.org/mailing_lists/users.php">http://www.gromacs.org/mailing_lists/users.php</a><br></blockquote></div><br>