<pre>Hi:<br>I'm using g_sas <i>to analyse a DPPC simulation but it gave the next warning:<br>WARNING: could not find a Van der Waals radius for 128 atoms<br>3840 out of 6400 atoms were classified as hydrophobic<br><br>
I saw that the </i><i>Van der Waals radius for phophorous atoms doesn't appear in vdwraddi.dat. When I modified it and add the </i><i>Van der Waals radius</i> for this atom and then it works well. But, where were taken the <i>Van der Waals radius</i> for Gromacs? Somebody knows the phophorous radius for gromacs?<br>
In the literature appears some valors and there aren't the same for this programs, such as:<br><br>Gromacs Other<br>N 0.110 0.155<br>O 0.105 0.152<br><br>Thank you in advance,<br>Maité<br> <br><br>
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