Here are the answers to the questions:<br><br>Did see the trajectory. Looks fine<br><br>Did start from different initial time frames, and thicker slabs, problem does not go away<br><br>Yes, the simulation has run for ~ 80 ns. It is equilibrated<br>
<br>Which log file ? What I reported was from the log file<br><br><br><div class="gmail_quote">On Tue, Jun 10, 2008 at 3:30 PM, Peyman Yamin <<a href="mailto:Peyman.Yamin@cbi.uni-erlangen.de">Peyman.Yamin@cbi.uni-erlangen.de</a>> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">Have you seen the trajectory? Did you try to start from different frames? Is<br>
your system equilibrated?<br>
check log file!<br>
<br>
Peyman<br>
<div><div></div><div class="Wj3C7c"><br>
<br>
On Tuesday 10 June 2008 13:35, himanshu khandelia wrote:<br>
> Hi,<br>
><br>
> I am trying to calculate the density in a bilayer simulation:<br>
><br>
> echo 27 | g_density -f lipiddrg.xtc -n all.ndx -s all.tpr -o head.xvg<br>
> -sl 200 -b 40000<br>
><br>
> The system size is about 6.5 x 6.5 x 9.6<br>
><br>
> I get the following error, after g_density has read most of the trajectory:<br>
><br>
> *** glibc detected *** g_density: free(): invalid next size (fast):<br>
> 0x0000000000877e70 ***<br>
><br>
> Can anyone please point out what the problem might be? The same<br>
> command works for other trajectories for me.<br>
><br>
> Thank you<br>
><br>
> -Himanshu<br>
> MEMPHYS, SDU, Denmark.<br>
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<br>
</div></div><font color="#888888">--<br>
Peyman Yamin<br>
Lehrstuhl fuer Thermische Verfahrenstechnik<br>
Universitaet Erlangen-Nuernberg<br>
Egerlandstr. 3<br>
91058 Erlangen<br>
Phone: +49(0) - 9131 - 85 27671<br>
Mailto: <a href="mailto:peyman.yamin@cbi.uni-erlangen.de">peyman.yamin@cbi.uni-erlangen.de</a><br>
</font><div><div></div><div class="Wj3C7c">_______________________________________________<br>
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</div></div></blockquote></div><br><br clear="all"><br>-- <br>Maria G.<br>Technical University of Denmark<br>Copenhagen