Thanks! And I've learned that Pymol can also do the job.<br><br>
<div class="gmail_quote">2008/7/12 DEEPESH AGARWAL <<a href="mailto:deepesh.iitd@gmail.com">deepesh.iitd@gmail.com</a>>:<br>
<blockquote class="gmail_quote" style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid">Hi,<br><br>In addition to what Justin has suggested, VMD has a tool to mutate a<br>residue- Extensions>Modeling>Mutate residue.<br>
<font color="#888888"><br>Deepesh<br></font>
<div>
<div></div>
<div class="Wj3C7c"><br><br>On 7/12/08, Justin A. Lemkul <<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>> wrote:<br>><br>><br>> Lee Soin wrote:<br>>> Hi!<br>>> Is there a command in GROMACS that can substitute the atoms of a whole<br>
>> residue for another? This is quite useful in doing mutation simulations.<br>>> Or if that's not possible, how should I mutate a residue? Thanks!<br>><br>> I would use a program like DeepView (Swiss-PDBViewer), or maybe Modeller.<br>
><br>> -Justin<br>><br>>><br>>> --<br>>> Sun Li<br>>> Department of Physics<br>>> Nanjing University, China<br>>><br>>><br>>> ------------------------------------------------------------------------<br>
>><br>>> _______________________________________________<br>>> gmx-users mailing list <a href="mailto:gmx-users@gromacs.org">gmx-users@gromacs.org</a><br>>> <a href="http://www.gromacs.org/mailman/listinfo/gmx-users" target="_blank">http://www.gromacs.org/mailman/listinfo/gmx-users</a><br>
>> Please search the archive at <a href="http://www.gromacs.org/search" target="_blank">http://www.gromacs.org/search</a> before posting!<br>>> Please don't post (un)subscribe requests to the list. Use the<br>
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><br>> --<br>> ========================================<br>><br>> Justin A. Lemkul<br>> Graduate Research Assistant<br>> Department of Biochemistry<br>> Virginia Tech<br>> Blacksburg, VA<br>> jalemkul[at]<a href="http://vt.edu/" target="_blank">vt.edu</a> | (540) 231-9080<br>
> <a href="http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin" target="_blank">http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin</a><br>><br>> ========================================<br>> _______________________________________________<br>
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</div></div></blockquote></div><br><br clear="all"><br>-- <br>Sun Li<br>Department of Physics<br>Nanjing University, China