<div dir="ltr">Hello,<br> I want to pull a protein from a DPPC lipid bilayer. It is written in
manual that it can be done by including pull.ppa and pull.ndx with the mdrun.<br> Now my question is how to write pull.ppa and pull.ndx.Can you tell me which parts I have to take care to make group in index file?<br>
Can
you tell me how to create pull.ndx properly, because during the making
of index file by giving make_ndx, I have confused which elements
should be grouped ( two tails of the DPPC molecule or tails of protein
molecule).<br>regards,<br>Anirban<br> <br></div>