<P>
<BR>
Hi all, <BR>
I want to analyse secondary struture of my protein which have run MD for 7ns. I have checked in archives about do_dssp, found that can use only .pdb file instead of .trr and .tpr. Then if type command with -h it has it has given .xtc, .tpr, and .ndx should use.<BR>
I am bit confusing with about do_dssp command.<BR>
Can you explain me clearly. <BR>
Thanks in advance.
</P>
<br><br>
<Table border=0 Width=644 Height=57 cellspacing=0 cellpadding=0 style='font-family:Verdana;font-size:11px;line-height:15px;'><TR><td><a href='http://adworks.rediff.com/cgi-bin/AdWorks/click.cgi/www.rediff.com/signature-default.htm/1050715198@Middle5/2206641_2199021/2201651/1?PARTNER=3&OAS_QUERY=null' target=new ><img src ='http://imadworks.rediff.com/cgi-bin/AdWorks/adimage.cgi/2206641_2199021/creative_2201651.gif' alt='Rediff Shopping' border=0></a></td></TR></Table>