<div dir="ltr">dear users <br>I am trying to run the simulation fo a protein/DMSO system,Its working well till genbox but while running GROMPP I am gettin a fatal error,which is <br>atom type 'SD' not found.<br>SD is given in the gro & itp file of DMSO.<br>
what should I do to overcome this problem........<br>I have tried by replacing SD by S,but its of no use<br>I should generate a separate top file for DMSO and then include it in the topology file generated for protein<br>
I tried to do this also using PDB2GMX command but again I am gettin error related to 'SD'<br>please help me..........<br>regards &thanx in advance<br clear="all"><br>-- <br>PRASUN (ASHOKA)<br>
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