<div dir="ltr"><div>Are you sure this will be done automaticaly if you'll procide gromacs with an output file called filename.trj?</div>
<div>There is also the option of converting into PDB: "trjconv -f traj.xtc -o trajtraj.pdb -s coordinates.gro".</div>
<div>omer.<br clear="all"><br>Koby Levy research group,<br>Weizmann Institute of Science. <br><a href="http://www.weizmann.ac.il/sb/faculty_pages/Levy/">http://www.weizmann.ac.il/sb/faculty_pages/Levy/</a><br><br><br></div>
<div class="gmail_quote">On Mon, Sep 8, 2008 at 20:14, ranqi zhu <span dir="ltr"><<a href="mailto:zhuranqi@msn.com">zhuranqi@msn.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="PADDING-LEFT: 1ex; MARGIN: 0px 0px 0px 0.8ex; BORDER-LEFT: #ccc 1px solid">
<div>Hi, Everyone,<br><br>I just want to use the clustering tool in amber which only take trj file.<br><br>Thanks<br><br>-Ranqi<br><br>
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