<div dir="ltr">Thanks for your response. <br>I followed the instruction in CVS. my architecture is x86-64, and compiler is gcc. thanks. <br>I will try 3.3.3<br>-Xianghong Qi<br><br><div class="gmail_quote">On Tue, Sep 16, 2008 at 4:02 PM, Justin A. Lemkul <span dir="ltr"><<a href="mailto:jalemkul@vt.edu">jalemkul@vt.edu</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><br>
<br>
xianghong qi wrote:<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;">
Hi, everyone:<br>
<br>
I am a beginner for Gromacs. I am using the latest version Gromacs 4.0 beta1. Then I follow the tutorial part: Introduction to MD <<a href="http://md.chem.rug.nl/education/mdcourse/" target="_blank">http://md.chem.rug.nl/education/mdcourse/</a>> by the Groningen group. Compiling is ok, but I always get the Segmentation fault when I use command : genbox -cp minimized_box.gro -cs spc216.gro -o minimized_water.gro -p aki.top. Also I get the same problem when i try other exercises. Does anyone has same problem like me ? or can anyone<div class="Ih2E3d">
<br>
give me a hint for that? Thanks in advance. <br>
</div></blockquote>
<br>
It sounds like your installation is faulty. What architecture are you running on? What compilers did you use?<br>
<br>
If you are just starting out, it is probably better to use an official release of Gromacs (the latest being 3.3.3), since 4.0beta1 is still in development.<br>
<br>
-Justin<br>
<br>
<blockquote class="gmail_quote" style="border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"><div class="Ih2E3d">
<br>
-Xianghong Qi<br>
<br>
-- <br>
Postdoctoral Associate<br>
Department of Chemistry<br>
University of Pittsburgh<br>
Chevron Science Center<br>
219 Parkman Avenue<br>
Pittsburgh, PA 15260<br>
Office: 338 EBERLY<br>
Phone: 412-383-5400<br>
<br>
<br>
Some people make the world more special just by being in it.<br>
<br>
<br></div>
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<br>
-- <br>
========================================<br>
<br>
Justin A. Lemkul<br>
Graduate Research Assistant<br>
Department of Biochemistry<br>
Virginia Tech<br>
Blacksburg, VA<br>
jalemkul[at]<a href="http://vt.edu" target="_blank">vt.edu</a> | (540) 231-9080<br>
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</blockquote></div><br><br clear="all"><br>-- <br>Postdoctoral Associate<br>Department of Chemistry<br>University of Pittsburgh<br>Chevron Science Center<br>219 Parkman Avenue<br>Pittsburgh, PA 15260<br>Office: 338 EBERLY<br>
Phone: 412-383-5400<br><br><br>Some people make the world more special just by being in it.<br>
</div>