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<body class='hmmessage'><div style="text-align: left;">Hi,<br><br>I just noticed that for some time there has been a bug genbox in Gromacs 4<br>that (always) caused a segv.<br>I have fixed it now.<br></div><br>Berk<br><br><hr id="stopSpelling">> Date: Wed, 17 Sep 2008 00:46:26 +0300<br>> From: chaban@univer.kharkov.ua<br>> To: gmx-users@gromacs.org<br>> Subject: [gmx-users] Re[2]: Segmentation fault in Gromacs 4.0 beta1<br>> <br>> <br>> >>> I am a beginner for Gromacs. I am using the latest version Gromacs 4.0<br>> >>> beta1. Then I follow the tutorial part: Introduction to MD <br>> >>> <http://md.chem.rug.nl/education/mdcourse/> by the Groningen group. <br>> >>> Compiling is ok, but I always get the Segmentation fault when I use <br>> >>> command : genbox -cp minimized_box.gro -cs spc216.gro -o <br>> >>> minimized_water.gro -p aki.top. Also I get the same problem when i try <br>> >>> other exercises. Does anyone has same problem like me ? or can anyone<br>> >>> give me a hint for that? Thanks in advance. <br>> >> <br>> >> It sounds like your installation is faulty. What architecture are you running <br>> >> on? What compilers did you use?<br>> >> <br>> >> If you are just starting out, it is probably better to use an official release <br>> >> of Gromacs (the latest being 3.3.3), since 4.0beta1 is still in development.<br>> >> <br>> >> -Justin<br>> <br>> VC> Justin,<br>> VC> A few days ago I experienced the same problem with genbox in gmx-4.0-beta. I didn't<br>> VC> pay much attention to it since it's just CVS but it actually was<br>> VC> permanently present.<br>> <br>> <br>> <br>> VC> gmx-4.0 compiled with the same parameters on the same system does not<br>> VC> give this error.<br>> <br>> I wanted to say gmx-3.3.3. I'm quite tired today, sorry.<br>> <br>> <br>> <br>> <br>> -- <br>> Vitaly V. Chaban<br>> School of Chemistry<br>> National University of Kharkiv<br>> Svoboda sq.,4, Kharkiv 61077, Ukraine<br>> email: chaban@univer.kharkov.ua<br>> skype: vvchaban<br>> tel.: +38-097-8259698<br>> <br>> _______________________________________________<br>> gmx-users mailing list gmx-users@gromacs.org<br>> http://www.gromacs.org/mailman/listinfo/gmx-users<br>> Please search the archive at http://www.gromacs.org/search before posting!<br>> Please don't post (un)subscribe requests to the list. Use the <br>> www interface or send it to gmx-users-request@gromacs.org.<br>> Can't post? Read http://www.gromacs.org/mailing_lists/users.php<br><br /><hr />Express yourself instantly with MSN Messenger! <a href='http://clk.atdmt.com/AVE/go/onm00200471ave/direct/01/' target='_new'>MSN Messenger</a></body>
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